View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-26-LTR4-TNT-insertion-7 (Length: 153)
Name: Tnk88-26-LTR4-TNT-insertion-7
Description: Tnk88-26-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-26-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 3e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 2187785 - 2187894
Alignment:
| Q |
34 |
ccttgagtaggatttaggagtaataggaataggagttggaaactgagttagtaagtattttttgtgaaggtgtagattcagtagagcaaagaccatgagt |
133 |
Q |
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| T |
2187785 |
ccttgagtaggatttaggagtaatatgaataggagttggaaactgagttagtaagtactttttgtgaaggtatagattcagtggagcaaagaccatgagt |
2187884 |
T |
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| Q |
134 |
agaaatatta |
143 |
Q |
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|||||||||| |
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| T |
2187885 |
agaaatatta |
2187894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 1608957 - 1608917
Alignment:
| Q |
103 |
gtgtagattcagtagagcaaagaccatgagtagaaatatta |
143 |
Q |
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| T |
1608957 |
gtgtagattcagtggagcaaagaccatgagtagaaatatta |
1608917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 19633050 - 19633010
Alignment:
| Q |
103 |
gtgtagattcagtagagcaaagaccatgagtagaaatatta |
143 |
Q |
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| T |
19633050 |
gtgtagattcagtggagcaaagaccatgagtataaatatta |
19633010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 41314150 - 41314041
Alignment:
| Q |
34 |
ccttgagtaggatttaggagtaataggaataggagttggaaactgagttagtaagtattttttgtgaaggtgtagattcagtagagcaaagaccatgagt |
133 |
Q |
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| T |
41314150 |
ccttgagtaggatttaggagtaatagtaataggagttggaaactgagttagtaagtactttttgtgaaggtgtagattccgtggagcaaagaccatgagt |
41314051 |
T |
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| Q |
134 |
agaaatatta |
143 |
Q |
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| T |
41314050 |
agaaatatta |
41314041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 11992261 - 11992191
Alignment:
| Q |
33 |
accttgagtaggatttaggagtaataggaataggagttggaaactgagttagtaagtattttttgtgaagg |
103 |
Q |
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| T |
11992261 |
accttgagtaggatttaggagtaataggaatagaaattggaaattgagttagtaaatactttttgtgaagg |
11992191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 29822564 - 29822662
Alignment:
| Q |
35 |
cttgagtaggatttaggagtaataggaataggagttggaaactgagttagtaagtattttttgtgaaggtgtagattcagtagagcaaagaccatgagta |
134 |
Q |
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| T |
29822564 |
cttgagtaggatttaggattaataggaat------tcaaaactgagttagtaaatactttttatgaaggtgtggattcagtggagcaaataccacgagtt |
29822657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 37806647 - 37806607
Alignment:
| Q |
103 |
gtgtagattcagtagagcaaagaccatgagtagaaatatta |
143 |
Q |
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| T |
37806647 |
gtgtagattcagtggagcaaagaccatgagtagaaatatta |
37806607 |
T |
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