View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-28-LTR4-TNT-insertion-1 (Length: 615)
Name: Tnk88-28-LTR4-TNT-insertion-1
Description: Tnk88-28-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-28-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 7 - 606
Target Start/End: Complemental strand, 51803953 - 51803357
Alignment:
| Q |
7 |
agattaccatcctaaggttgcagattttgggattgctaaggttttgcaggcaagaggagcaaaggattccacaaccacggttattgctggaacttatggt |
106 |
Q |
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| T |
51803953 |
agattaccatcctaaggttgcagattttgggattgctaaggttttgcaggcaagaggagcaaaggattccacaaccacggtcattgctggaacttatggt |
51803854 |
T |
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| Q |
107 |
tacctagccccaggtaaataaattctcaatctaacctattaatatcatcgaccaaatcacgagaattaagaaagttggccttaatatgaaatttgttgcc |
206 |
Q |
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| T |
51803853 |
tacctagccccaggtaaataaattctcaatttaacctattaatgtcatcgaccaaatcacgagaattaagaaagttgaccttaatatgaaatttgttgcc |
51803754 |
T |
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| Q |
207 |
aattaatattgttttacaagcttatcctttagagaacaagtttaatttatattttcatcataggacttacttattacaggttgcagaagactaaataaca |
306 |
Q |
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| T |
51803753 |
aattaatattgttttacaagcttatcctttagagaacacgtttaatttatattttcatcataggacttacttattacaggttgcagaaaactaaata--- |
51803657 |
T |
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| Q |
307 |
taattaggagtatgttggtaaaataataattaacacagttaaaacttcaaaaggattatatatttagggacagaggtaggatttgattaaacagtatttt |
406 |
Q |
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| T |
51803656 |
taattagaagtatgttggtaaaataataattaacacagttaaaacttcaaaaggattatatatttagggacagaggtaggatttgattaaacagtatttt |
51803557 |
T |
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| Q |
407 |
gtattagggtattagtcatgtggttaacttaagcggtaagtaatcttattatcatatcgtaagcttgtttaaatctaattaatttgttttgatggatggt |
506 |
Q |
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| T |
51803556 |
gtattagggtattagtgatgtggttaacttaagcggtaagtaatcttattatcatattgtaagcttgtttaaatctatttaatttgttttgatggatggt |
51803457 |
T |
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| Q |
507 |
gtgacagaatatgcatattcaccaagagcaacaacaaagtgtgatgtgtacagttttggtgtgattttgttggaattattaactgggaggaagccaattg |
606 |
Q |
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| T |
51803456 |
gtgacagaatatgcatattcaccaagagcaaccacaaagtgtgatgtgtacagttttggtgtgattttgttggaattattaactgggaggaagccaattg |
51803357 |
T |
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