View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-28-LTR4-TNT-insertion-12 (Length: 363)
Name: Tnk88-28-LTR4-TNT-insertion-12
Description: Tnk88-28-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-28-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 32266766 - 32267112
Alignment:
| Q |
8 |
atatgtagagcatatatcaactgcttcaaaatccaggtattctactgtatcttggcttgactttgaatttgtgaatagaaaattaaatcgttacgatcaa |
107 |
Q |
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| T |
32266766 |
atatgtagagcatatatcaactgctccaaaatccaggtattctactgtatcttggcttgactttgaatttgtgaagagaaaattaaatcgttacgatcaa |
32266865 |
T |
|
| Q |
108 |
aagttatgtgattcacttcaaacttgtgtgctctttgtgaccttgtttactaatcataggttcttaaattcacttagagaagtt-gtaaaagatcacaag |
206 |
Q |
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| T |
32266866 |
aagttatgtgattcactgcaaacttgtgtgctctttgtgaccttgtttactaatcataggttcttaaattcacttagagaagttggtaaaagatcacaag |
32266965 |
T |
|
| Q |
207 |
aactctctgttgtgtgtctcgtgcaatggaacaagaaagcatcgatggaaattgatttaaaagcattatttgctttccttttaggtgtgttgttggttga |
306 |
Q |
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| T |
32266966 |
aactctctgttgtgtgtctcgtgcaatggaacaagaaagcatcgatggaaattgatttaaaagcattatttgctttccttttaggtgtgttgttggttga |
32267065 |
T |
|
| Q |
307 |
tactcttttatagatatttctttcaggtcaaagctatttcaagaatt |
353 |
Q |
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| T |
32267066 |
tactcttttatagatatttctttcaggtcaaagctatttcaagaatt |
32267112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 33180089 - 33180402
Alignment:
| Q |
18 |
catatatcaactgcttcaaaatccaggtattctactgtatcttggcttgactttgaatttgtgaatagaaaattaaatcgttacgatcaaaagttatgtg |
117 |
Q |
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| T |
33180089 |
catatataaactgctccaagattaaggtattatactatatcttagcttgactttaaatttgtgaataataaatgtaattgttacagtcaaaagttgtgcg |
33180188 |
T |
|
| Q |
118 |
attcacttcaaacttgtgtgctctttgtgaccttgtttactaatcataggttcttaaattcacttagagaagtt-gtaaaagatcacaagaactctctgt |
216 |
Q |
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||||||| |||| || |||||| |||||||| ||| || |||| |||| |||||||||||||||||||||| || |||||||||||| | || ||||| | |
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| T |
33180189 |
attcactgcaaatttctgtgctttttgtgactttggttgctaaccataagttcttaaattcacttagagaactttgtaaaagatcactacaagtctctat |
33180288 |
T |
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| Q |
217 |
tgtgtgtctcgtgcaatggaacaagaaagcatcgatggaaattgatttaaaagcattatttgctttccttttaggtgtgttgttggttgatactctttta |
316 |
Q |
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||||||| || || |||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
33180289 |
tgtgtgtttcatgaaatgtaacaagaaagcatagtaggaaattgatttaaaagcattatttgttttccttttagatgtgttgttgggtgatactctttta |
33180388 |
T |
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| Q |
317 |
tagatatttctttc |
330 |
Q |
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|||||||||||||| |
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| T |
33180389 |
tagatatttctttc |
33180402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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