View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-28-LTR4-TNT-insertion-7 (Length: 468)
Name: Tnk88-28-LTR4-TNT-insertion-7
Description: Tnk88-28-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-28-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 18590524 - 18590078
Alignment:
| Q |
11 |
cgacatacccgaacggtgagggtctggttttctttgggattgacaatggaatagttgccaaatgtcatcaaataattcttcatgttttcagcaaagcatc |
110 |
Q |
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| T |
18590524 |
cgacatacccgaacggtgagggtctggttttctttgggattgacaatggaatagttgccaaatgtcatcaaataattcttcatgttttcagcaaagcatc |
18590425 |
T |
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| Q |
111 |
tagcaactccaggttgcaaatcaaacctcatggattgaactgaacatgaaaacagtcccaacgctagaacaataagaaaaagaaaatagggttggtgctt |
210 |
Q |
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| T |
18590424 |
tagcaactccaggttgcaaatcaaacctcatggattgaactgaacatgaaaacagtcccacagctagaaaaagaagaaacagaaaatagggttggtgctt |
18590325 |
T |
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| Q |
211 |
taattcaaccattttcataaaagtttgtgaaatgagaagaagaaattagtggactgtggtcagttagtactacaagtacaatatcttttgatgatttgtt |
310 |
Q |
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| T |
18590324 |
taattcaaacattttcataatagtttgtgaaatgagaagaagaaattagtggacggtggtcaattagtactacaagtacaatatcttttgatgatgtgtt |
18590225 |
T |
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| Q |
311 |
tttccaaatttatttgttacgtggttaaatttcattggaaaatgcacgtaannnnnnnnnnnnccttcaatcacattggttgttttgtatttattgcatt |
410 |
Q |
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| T |
18590224 |
tttccaaatttatttgttacgtggttaaatttcattggaaaatgcacgtaa-tttttcttttcccttcaatcacattggttgttttgtatttattgcatt |
18590126 |
T |
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| Q |
411 |
caacgggctattatctttttccttctttacgttaggaaaaatccatta |
458 |
Q |
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| T |
18590125 |
caacgggctattatctttttccttctttacattaggaaaaatccatta |
18590078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 18585182 - 18585061
Alignment:
| Q |
68 |
ccaaatgtcatcaaataattcttcatgttttcagcaaagcatctagcaactccaggttgcaaatcaaacctcatggattgaactgaacatgaaaacagtc |
167 |
Q |
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| T |
18585182 |
ccaattgtcatcgaatttttcttgatgtcttcagcaatgcatctagtaactccagtttgcaaatcaaacctcatggattgaactaaacatgtaaacaatc |
18585083 |
T |
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| Q |
168 |
ccaacgctagaacaataagaaa |
189 |
Q |
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| T |
18585082 |
ctaccattagaacaagaagaaa |
18585061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 18606442 - 18606365
Alignment:
| Q |
126 |
gcaaatcaaacctcatggattgaactgaacatgaaaacagtcccaacgctagaacaataagaaaaagaaaatagggtt |
203 |
Q |
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| T |
18606442 |
gcaaatcaaacctcatggattgaactgaaaatgaaaacagtcccatagctacaacaagaagaaaaagcaaatagggtt |
18606365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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