View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-1 (Length: 639)
Name: Tnk88-32-LTR4-TNT-insertion-1
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 173 - 629
Target Start/End: Original strand, 37919161 - 37919618
Alignment:
| Q |
173 |
attaaagcttatataatactca-taccccgagaaaatcactccacaattttctatgatcgtgtgtgattcactttcgtgcattatactatttcaagctgc |
271 |
Q |
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| T |
37919161 |
attaaagcttatatattactcaataccccgagaaaatcactccacaattttctatgatcgtgtgtgattcactttcgtacattatactatttcaagctgc |
37919260 |
T |
|
| Q |
272 |
actgtatcgcgatttttgacaaaatgaaacagagaaatcagttgagttaatcgttggatccagaagcttcatcatcaaatcttgagccaatttcaaaatt |
371 |
Q |
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| T |
37919261 |
actgtatcgcgatttttgacaaaatgaaacagagaaatcagttgagttaatcgttggatccagaagcttcatcatcaaatcttgagccaatttcaatatt |
37919360 |
T |
|
| Q |
372 |
ttccatttctaccaccttttgaaacaaatttgttaatccttccaccgcaattataggaatgggactgagaggatatccttatctcaatcatttgcctact |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37919361 |
ttccatttctaccaccttttgaaacaaatttgttaatccttccaccgcaattataggaatgggactgagaggatatccttatctcaatcatttgcctact |
37919460 |
T |
|
| Q |
472 |
atgaatttcgatgttggacttccatttaccggaattaacattgtactgtggtttaaatctaggctacatcctgttgataatttctacataccgattgtga |
571 |
Q |
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| T |
37919461 |
atgaatttcgatgttggacttccatttaccggaattaacattgtactgtggtttaaatctaggctacatcctgttgataatttctacataccgattgtga |
37919560 |
T |
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| Q |
572 |
caaccaccacaaccatactgtatttcaatttcatattgcatagatttgtgttagaatt |
629 |
Q |
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| T |
37919561 |
caaccaccacaaccatactgtatttcaatttcatattgcatagatttgtgttagaatt |
37919618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 37918975 - 37919123
Alignment:
| Q |
10 |
accaaatacattcacttttgttgataaatttttgctttatagtttaagacggatagagtatttcccgatccaagaatctcactttaatcaatccttaatt |
109 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37918975 |
accaaatacattcacttttgttgacaaattttcgctt-atagtttaagacggatagagtattttccgatccaagaatctcactttaatcaatccttaatt |
37919073 |
T |
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| Q |
110 |
agtctataaggtccttaaaagctctcccatttggtttgacaagattacat |
159 |
Q |
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| T |
37919074 |
agtctataaggtccttaaaagctctctcatttggtttgacaagattacat |
37919123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 8777818 - 8777767
Alignment:
| Q |
10 |
accaaatacattcacttttgttgataaatttttgctttatagtttaagacgga |
62 |
Q |
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| T |
8777818 |
accaaatatattaacttttgttgatcaatttttg-tttatattttaagacgga |
8777767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 13210013 - 13209977
Alignment:
| Q |
10 |
accaaatacattcacttttgttgataaatttttgctt |
46 |
Q |
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| T |
13210013 |
accaaatacattaacttttgttgatcaatttttgctt |
13209977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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