View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-10 (Length: 130)
Name: Tnk88-32-LTR4-TNT-insertion-10
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 32803701 - 32803587
Alignment:
| Q |
6 |
cactctggtccaaccaaattggttctttacttcactggagctaccaacattctctatacctttggtggacatgctgttacagtgtgaggactaaaaagct |
105 |
Q |
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| T |
32803701 |
cactctggtccaaccaaattggttctttacttcaccggagctaccaacattctctatacctttggtggacatgctgttacagtgtgaggactaaaaagct |
32803602 |
T |
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| Q |
106 |
ttaagagatcaatta |
120 |
Q |
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| T |
32803601 |
ttaagagatcaatta |
32803587 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 24627586 - 24627643
Alignment:
| Q |
33 |
tacttcactggagctaccaacattctctatacctttggtggacatgctgttacagtgt |
90 |
Q |
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| T |
24627586 |
tacttcactggagcaaccaatatactatacacatttggtggacatgctgttacagtgt |
24627643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 4533974 - 4534059
Alignment:
| Q |
5 |
acactctggtccaaccaaattggttctttacttcactggagctaccaacattctctatacctttggtggacatgctgttacagtgt |
90 |
Q |
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| T |
4533974 |
acactctggtccaacaaagctagtgctgtacttcactggagccactaacatactctacacattcggtggacatgctgtgacagtgt |
4534059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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