View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-12 (Length: 385)
Name: Tnk88-32-LTR4-TNT-insertion-12
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 4686477 - 4686110
Alignment:
| Q |
9 |
gtattaggatgataatcacctgaaaatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaagccttgttggtttgtgtatgaca |
108 |
Q |
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| T |
4686477 |
gtattaggatgataatcacctgaaaatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaagccttgttggtttgtgtatgaca |
4686378 |
T |
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| Q |
109 |
acattgatggtggtggaggttggggtgttgatagcaaaggttgcatgacatgtggtaaatatggttgttcttgaaccaaatttgataaggaaaattcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4686377 |
acattgatggtggtggaggttggggtgttgatagcaaaggttgcatgacatgtggtaaatatggttgttcttgaaccaaatttgataaggaaaattcatt |
4686278 |
T |
|
| Q |
209 |
actactcatcactctattattattgctttcttgcttaacaatagcaccattatttcctctattacgtgcttgttgttgttgatctttacggtgtttcccc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4686277 |
actactcatcactctattattattgctttcttgcttaacaatagcaccattatttcctctattacgtgcttgttgttgttgatctttacggtgtttcccc |
4686178 |
T |
|
| Q |
309 |
aaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattg |
376 |
Q |
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| T |
4686177 |
aaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattg |
4686110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 49848563 - 49848599
Alignment:
| Q |
334 |
tccaatagttctttatgtcattatcagttcttcctgg |
370 |
Q |
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| T |
49848563 |
tccaatagttctttatctcattatctgttcttcctgg |
49848599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 47846516 - 47846624
Alignment:
| Q |
268 |
tattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc |
367 |
Q |
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|||||||||||||| |||||| |||||||| || ||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||| |
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| T |
47846516 |
tattacgtgcttgtaattgttgttctttacgatgcttcccaaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc |
47846615 |
T |
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| Q |
368 |
tggcaattg |
376 |
Q |
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|||||||| |
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| T |
47846616 |
gggcaattg |
47846624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 47846314 - 47846366
Alignment:
| Q |
33 |
aatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaa |
85 |
Q |
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| T |
47846314 |
aatctcccaccaagcttgattagaaattttctaatagaatcttgatcgttgaa |
47846366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 40253988 - 40254055
Alignment:
| Q |
309 |
aaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattg |
376 |
Q |
| |
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||||| ||||| |||||| |||| ||||||||||||||||| |||||||| |||| |||||| ||||| |
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| T |
40253988 |
aaaagtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattg |
40254055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 53557781 - 53557729
Alignment:
| Q |
315 |
ttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc |
367 |
Q |
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||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||| |
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|
| T |
53557781 |
ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttcc |
53557729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 2461596 - 2461543
Alignment:
| Q |
312 |
agcttctttttcaaccttgtattccaatagttctttatgtcattatcagttctt |
365 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
2461596 |
agcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctt |
2461543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 5113943 - 5113879
Alignment:
| Q |
312 |
agcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattg |
376 |
Q |
| |
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|||||||| |||| ||| || ||||| ||||||||||| |||||||| |||| |||||| ||||| |
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| T |
5113943 |
agcttcttcttcagcctagtgttccagtagttctttatatcattatccgttcgtcctggtaattg |
5113879 |
T |
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