View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-32-LTR4-TNT-insertion-16 (Length: 555)

Name: Tnk88-32-LTR4-TNT-insertion-16
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-32-LTR4-TNT-insertion-16
Tnk88-32-LTR4-TNT-insertion-16
[»] chr2 (4 HSPs)
chr2 (14-546)||(14218639-14219172)
chr2 (125-546)||(34680971-34681385)
chr2 (284-415)||(38327413-38327543)
chr2 (439-514)||(14891583-14891658)
[»] chr3 (6 HSPs)
chr3 (114-546)||(52653605-52654038)
chr3 (201-418)||(40574254-40574471)
chr3 (131-415)||(33709792-33710077)
chr3 (283-419)||(31362265-31362401)
chr3 (299-400)||(16729756-16729857)
chr3 (439-513)||(33709678-33709752)
[»] chr6 (2 HSPs)
chr6 (114-546)||(28612001-28612431)
chr6 (144-382)||(11931950-11932188)
[»] chr8 (5 HSPs)
chr8 (125-546)||(12729222-12729644)
chr8 (283-546)||(28696108-28696369)
chr8 (114-236)||(28695971-28696094)
chr8 (242-386)||(14546261-14546403)
chr8 (271-412)||(44729042-44729183)
[»] chr1 (11 HSPs)
chr1 (117-538)||(49053630-49054055)
chr1 (117-538)||(49061210-49061635)
chr1 (151-414)||(42263319-42263583)
chr1 (286-421)||(50059450-50059585)
chr1 (287-401)||(17458387-17458501)
chr1 (286-385)||(52282037-52282138)
chr1 (248-419)||(31285890-31286061)
chr1 (305-513)||(10917398-10917592)
chr1 (305-386)||(12634476-12634557)
chr1 (440-538)||(17458258-17458356)
chr1 (459-526)||(12634348-12634416)
[»] chr5 (13 HSPs)
chr5 (117-546)||(9851300-9851728)
chr5 (117-415)||(29006447-29006746)
chr5 (438-546)||(36202947-36203055)
chr5 (441-544)||(29006305-29006408)
chr5 (114-364)||(9080505-9080755)
chr5 (135-229)||(15205481-15205576)
chr5 (313-412)||(26900465-26900564)
chr5 (114-227)||(36203207-36203321)
chr5 (307-418)||(36203051-36203162)
chr5 (114-163)||(2022672-2022721)
chr5 (281-351)||(11042814-11042884)
chr5 (318-363)||(10498135-10498180)
chr5 (308-385)||(15205357-15205434)
[»] chr4 (14 HSPs)
chr4 (114-415)||(20251370-20251674)
chr4 (120-385)||(48779718-48779984)
chr4 (286-545)||(24129368-24129627)
chr4 (288-379)||(24391833-24391923)
chr4 (305-380)||(47078080-47078155)
chr4 (439-543)||(1494951-1495056)
chr4 (295-415)||(27538127-27538247)
chr4 (439-538)||(1516510-1516609)
chr4 (463-538)||(1533060-1533135)
chr4 (439-545)||(20251229-20251334)
chr4 (295-376)||(25328605-25328686)
chr4 (434-546)||(48780035-48780147)
chr4 (114-163)||(3415594-3415643)
chr4 (114-163)||(18670554-18670603)
[»] chr7 (15 HSPs)
chr7 (114-546)||(12239475-12239908)
chr7 (256-507)||(34091467-34091719)
chr7 (290-406)||(24870389-24870505)
chr7 (114-197)||(37469058-37469141)
chr7 (287-415)||(1840614-1840741)
chr7 (178-385)||(20463987-20464195)
chr7 (335-415)||(24871395-24871475)
chr7 (114-313)||(23757023-23757222)
chr7 (356-418)||(30108282-30108344)
chr7 (324-421)||(24533342-24533441)
chr7 (440-534)||(1840494-1840589)
chr7 (439-542)||(24870272-24870375)
chr7 (165-237)||(30276205-30276278)
chr7 (498-546)||(24533238-24533286)
chr7 (448-496)||(30108361-30108409)
[»] scaffold0007 (2 HSPs)
scaffold0007 (284-526)||(217603-217842)
scaffold0007 (117-169)||(217947-217999)


Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Original strand, 14218639 - 14219172
Alignment:
Q  14 actttataattcaaacaacatttcttaatacttgatttttggttagatgcttctatattaaaggacacatggagtaattcggttggctattatactctcg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14218639 actttataattcaaacaacatttcttaatacttgatttttggttagatgcttctatattaaaggacacatggagtaattcggttggctattttactctcg 14218738  T
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcccaccagttatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218739 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttaaaagtgtgtgttagacaaactaacttttaggttcgattcgtcccaccagttatg 14218838  T
Q  214 tcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgat 313  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218839 tcaactggatgcaaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgat 14218938  T
Q  314 agtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtg 413  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14218939 agtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtg 14219038  T
Q  414 atttttgt-cctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaag 512  Q
    |||||||| ||||       ||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14219039 atttttgtacctatttttttgaattattttctgctgccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaag 14219138  T
Q  513 agttggttcatgaacggttacattgcttcaattg 546  Q
    ||||||||||||| || |||||||||||||||||    
T  14219139 agttggttcatgaccgattacattgcttcaattg 14219172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 125 - 546
Target Start/End: Original strand, 34680971 - 34681385
Alignment:
Q  125 gaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcg-tcccaccagttatgtcaactggat 223  Q
    |||| ||||||||||||  | ||||||| ||||| ||||  |||||  |  | |||||||||||||||||||| | ||||| |||||||| ||||| | |    
T  34680971 gaagatgaacatgatgaagactgcacatgaatttaaaagcatgtgtggggtacactaacttttaggttcgatttgctcccatcagttatgccaactaggt 34681070  T
Q  224 gcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaa 323  Q
    |||||||  ||||| |  |||||   ||||||||| |||  |||      |||||| || ||||||||| ||| |||||| ||||||||||||||||  |    
T  34681071 gcaaaaggatatataagcgaatccttttcaggatactatgaaatt-----cttgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgta 34681165  T
Q  324 ataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttt-tgtc 422  Q
    |||||||| | |||||||| ||||| ||| |||||||||||||||| |    || |||||||  ||||||||||||||||||| ||||||||||| |||     
T  34681166 ataaagttttgtcaatttctctcgttcaccagagaaaagaaagaattag---gtgttattttcggcataattttgactcacaagaatgtgattttctgt- 34681261  T
Q  423 ctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttca 522  Q
     |         | | ||||| |||||  ||| |||  ||||||||||||||||||||| | ||||| ||||| ||||||| ||||  ||||||| |||||    
T  34681262 gtctttttctaactgattttatgcctaaaaaatgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttca 34681361  T
Q  523 tgaacggttacattgcttcaattg 546  Q
    | || ||| |||||||||||||||    
T  34681362 tcaatggtaacattgcttcaattg 34681385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 284 - 415
Target Start/End: Original strand, 38327413 - 38327543
Alignment:
Q  284 acattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatt 383  Q
    |||||||||||||||| ||| ||||||| || |||||| ||||||||| |  ||||||| ||| |||| ||||||||  | ||||||||||  |||||||    
T  38327413 acattcacaccaaacgcatcgatcaatggtaatttacataataaagttttggcaatttctctc-tgcagtagagaaagtatagaatgatttcatattatt 38327511  T
Q  384 tttagcataattttgactcacaataatgtgat 415  Q
    || |||||| |||| |||||| ||||||||||    
T  38327512 ttcagcatagtttttactcacgataatgtgat 38327543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 514
Target Start/End: Complemental strand, 14891658 - 14891583
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagag 514  Q
    |||| ||||| |||||||| |||| ||||||| |||  |||| ||||||||| ||||| ||||| |||||||||||    
T  14891658 ttttttgcctacaaagtgtctctacttatagaaaaacatatgtcatttggtgcagagatacaactctttgaaagag 14891583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 114 - 546
Target Start/End: Complemental strand, 52654038 - 52653605
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcc-caccagttat 212  Q
    ||||||||||||||  ||||||||||||   ||||||||||||| ||||| ||||||  |||| |||||| ||||||||| ||||| || ||||||||||    
T  52654038 aagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttcaattcgccctcaccagttat 52653939  T
Q  213 gtcaactggatgcaaaagagt-atatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatg 311  Q
    | |||| ||||||||||  || ||| |   ||||| |||||||||||  || |||||  |||| |||| || ||||||||| |||  ||||| | |||||    
T  52653938 gccaaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcga-caatg 52653840  T
Q  312 atagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatg 411  Q
     ||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||| |||||  |||||||| ||||    
T  52653839 gtagtttacagaataaagttctgtcaattttcctcgtgcactagagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatg 52653740  T
Q  412 tgatttt-tgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaa 510  Q
    | ||||| ||| | |       ||||| ||||||||||||||||||| | | | |||||||||| || || | ||||||||||||| |||||  ||| ||    
T  52653739 taattttctgt-cgatattactgaattcttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaa 52653641  T
Q  511 agagttggttcatgaacggttacattgcttcaattg 546  Q
    |||||| ||||||||| ||||||||||| |||||||    
T  52653640 agagtttgttcatgaatggttacattgcatcaattg 52653605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 201 - 418
Target Start/End: Original strand, 40574254 - 40574471
Alignment:
Q  201 cccaccagttatgtcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgt 300  Q
    ||||||||| |||| || |||||||||||  | ||||||  ||||  ||||||||||| ||| |||||  |||| |||| || |||||||||| || |||    
T  40574254 cccaccagtaatgttaattggatgcaaaatggcatatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgt 40574353  T
Q  301 atccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgac 400  Q
    ||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||    
T  40574354 atcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatgatttaatattattttcggcagaattttgac 40574453  T
Q  401 tcacaataatgtgatttt 418  Q
    |||||| |||||||||||    
T  40574454 tcacaagaatgtgatttt 40574471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 131 - 415
Target Start/End: Complemental strand, 33710077 - 33709792
Alignment:
Q  131 gaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtc-ccaccagttatgtcaactggatgcaaaa 229  Q
    |||||||||||   |||||| |||||| ||||| ||||||  |||| |||||| |||||| |||||||  | ||||||||||||||||| ||||||||||    
T  33710077 gaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaaaa 33709979  T
Q  230 gagtatatcaatg--aatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataa 327  Q
    | ||||||    |  |||| |||| ||||||  ||||||||  |||| |||| || ||||||||||||| |||||| | ||||| ||||||||| |||||    
T  33709978 gggtatataccggctaatcccctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataa 33709880  T
Q  328 agttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgat 415  Q
    |||||| |||| ||| || ||||||||||||||||||||||||||||||||| |||||  ||| ||||| ||||||| | ||||||||    
T  33709879 agttctgtcaaattctctggtgcactagagaaaagaaagaatgatttagtataattttcggcaaaatttagactcaccagaatgtgat 33709792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 283 - 419
Target Start/End: Original strand, 31362265 - 31362401
Alignment:
Q  283 tacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattat 382  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||||||||| ||||||| |||||||||||| | |||| ||| ||  ||||||||||||    
T  31362265 tacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataaaaaaaaatttagtattat 31362364  T
Q  383 ttttagcataattttgactcacaataatgtgattttt 419  Q
    |||   || ||||||||||||||| ||||||||||||    
T  31362365 tttcgacagaattttgactcacaagaatgtgattttt 31362401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 16729857 - 16729756
Alignment:
Q  299 gtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttg 398  Q
    ||||| ||||||||||||||||||||||||||| | ||||||| | |||||||||| | |||||||||||||||||| ||||||||||| || |||| ||    
T  16729857 gtatcgatcaatgatagtttacaaaataaagttatgtcaattttcttcgtgcactaaataaaagaaagaatgatttaatattatttttaacaaaattctg 16729758  T
Q  399 ac 400  Q
    ||    
T  16729757 ac 16729756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 513
Target Start/End: Complemental strand, 33709752 - 33709678
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaaga 513  Q
    ||||||||||||||||||| |||||||||||||||| ||||| | |||||||||| |||| ||| ||||||||||    
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaaga 33709678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 114 - 546
Target Start/End: Original strand, 28612001 - 28612431
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttat 212  Q
    ||||||||||||||  ||||||||||||   |||||||||||||| ||||||||||  | |||   |||| |||||||||||||  |||| |||||||||    
T  28612001 aagaagatgatgaatatgaacatgatgaagtgtgcacataaattttaaagtgtgtggaacaca---taacctttaggttcgatttttccccaccagttat 28612097  T
Q  213 gtcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatga 312  Q
    |||||| | ||| ||||  |||||||   ||||| ||||||| |||  || |||||  |||| |||| |||||||||||||||| | ||||  ||||||     
T  28612098 gtcaacagtatgtaaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatgg 28612197  T
Q  313 tagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgt 412  Q
    |||| ||||||| || ||||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||  ||| ||||| ||||||||| |||||    
T  28612198 tagtatacaaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgt 28612297  T
Q  413 gatttttgtc-ctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaa 511  Q
    || ||||||| |||       ||||  ||||||||||| ||||||| | | |||||| ||||| ||||| ||||||||||||| ||||||   |||| ||    
T  28612298 ga-ttttgtctctatttttctgaatacttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaa 28612396  T
Q  512 gagttggttcatgaacggttacattgcttcaattg 546  Q
    ||||| |||||||||  |||| |||||||||||||    
T  28612397 gagtttgttcatgaattgttatattgcttcaattg 28612431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 144 - 382
Target Start/End: Complemental strand, 11932188 - 11931950
Alignment:
Q  144 agtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttatgtcaactggatgcaaaagagt-atatcaat 241  Q
    ||||||||||||||||||||  |||||| |||| |||||| |||||||| |||||| ||| || ||||||| |||| ||||||||||| || ||| ||      
T  11932188 agtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccagc 11932089  T
Q  242 gaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaattt 341  Q
    ||| | |||||||||||  ||  ||||  |||  |||| ||   |||||||||||   |||| | ||||| ||||||| | |||||| |||| |||| ||    
T  11932088 gaacc-ccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaagtttatcga-caatggtagtttatagaataaaattctgtcaaatt 11931991  T
Q  342 ccctcgtgcactagagaaaagaaagaatgatttagtattat 382  Q
    | ||||||||||||| ||||||||||||||| |||||||||    
T  11931990 ctctcgtgcactagataaaagaaagaatgatatagtattat 11931950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 125 - 546
Target Start/End: Complemental strand, 12729644 - 12729222
Alignment:
Q  125 gaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtc-ccaccagttatgtcaactggat 223  Q
    |||| |||||||||||| |||| ||||| |||| ||||| ||||||  |||| |||||| ||||||| ||||||| | |||||||||||| |||| ||||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  224 gcaaaagagt-atatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaa 322  Q
    ||||||| || ||| |   || || |||||||||||  ||  ||||  |||| |||| || ||||||||||||| | |||| | ||||  ||||||||      
T  12729544 gcaaaagggttataccggcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcga-caattgtagtttactg 12729446  T
Q  323 aataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttt-tgt 421  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||  ||| ||||||||| ||||| ||||||||||| |||    
T  12729445 aataaagttctgtcaatttctctcgtgcactagagaaaagaaagaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgt 12729346  T
Q  422 cctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttc 521  Q
     |||       || || ||||||||||||| | ||  |||||||| ||||||||||||| | | ||||||||||||||||| ||||  ||||||| | ||    
T  12729345 -ctatatttttgacttcttttctgcctccataatgcatctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctc 12729247  T
Q  522 atgaacggttacattgcttcaattg 546  Q
    ||||| ||||| |||||||||||||    
T  12729246 atgaatggttatattgcttcaattg 12729222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 283 - 546
Target Start/End: Original strand, 28696108 - 28696369
Alignment:
Q  283 tacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattat 382  Q
    |||||||||||||| |||||  |||||||||| |||| | ||||||||||| ||||||| |||||||| || ||||||||||||||||||| |    |||    
T  28696108 tacattcacaccaagcgtattgatcaatgataatttatagaataaagttctgtcaattttcctcgtgccctggagaaaagaaagaatgattca----tat 28696203  T
Q  383 ttttagcataattttgactcacaataatgtgatt-tttgtc-ctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatg 480  Q
    ||| |||  ||||| ||||||||| ||||||||  ||| || ||         ||| ||||||||| |||||||||| ||||||||| |||||| |||||    
T  28696204 tttcagctgaatttagactcacaagaatgtgatactttatctctttttctctcaatcattttctgcatccaaagtgtctctatttatggagaaacttatg 28696303  T
Q  481 ccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgcttcaattg 546  Q
       ||||||||||||||||| | ||||  ||||||| ||||||||| |||||||||||||||||||    
T  28696304 ttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattgcttcaattg 28696369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 28695971 - 28696094
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcc-caccagttat 212  Q
    ||||||||||||||  ||||||||||||  | ||| |||||||| ||||| ||||||  |||| ||||||||||||||| |||||| || ||||||||||    
T  28695971 aagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccctcaccagttat 28696070  T
Q  213 gtcaactggatgcaaaagagtata 236  Q
    ||||||  |||||||||| |||||    
T  28696071 gtcaaccagatgcaaaagggtata 28696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 14546261 - 14546403
Alignment:
Q  242 gaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaattt 341  Q
    |||||||||| | |||||| | |||||  |||| |||| || ||||||||||||||| |||| ||||||| || |||||| | ||||||| | |||||||    
T  14546261 gaatctcctt-atgatatttttgaatccgtgacatgacttgcacattcacaccaaac-tatcgatcaatggtactttacatactaaagttatgtcaattt 14546358  T
Q  342 ccctcgtgcactagagaaaagaaagaatgatttagtattattttt 386  Q
    | ||  | || ||||||||||||||||||||||||||||||||||    
T  14546359 ctctgattcattagagaaaagaaagaatgatttagtattattttt 14546403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 44729183 - 44729042
Alignment:
Q  271 tgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatg 370  Q
    |||| |||| || ||||||| ||||| |||||| ||||||||||||||||| |||  |||| |  |||| || |||||||||||| |||| |||||||||    
T  44729183 tgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaatgtagttgt--caatctctctcgtgcactagggaaatgaaagaatg 44729086  T
Q  371 atttagtattatttttagcataa--ttttgactcacaataatgt 412  Q
    | ||| |||||||||  ||  ||  |||||||||||||||||||    
T  44729085 acttaatattattttcggctgaattttttgactcacaataatgt 44729042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 9e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 117 - 538
Target Start/End: Complemental strand, 49054055 - 49053630
Alignment:
Q  117 aagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttatgtc 215  Q
    ||||||| |||| ||||||||||||   || |||||||||| ||| | ||||||  || | |||||| ||||||||||||||| ||| |||||||||  |    
T  49054055 aagatgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttatacc 49053956  T
Q  216 aactggatgcaaaagagt-atatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgata 314  Q
    ||||||||||||||| || ||| |   ||||| |||||||||||  ||  ||||  |||| |||| || ||||||||||||| | |||| | ||||| ||    
T  49053955 aactggatgcaaaagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatcga-caatggta 49053857  T
Q  315 gtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtatta-tttttagcataattttgactcacaataatgtg 413  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||| |||| |||| ||||| ||||||    
T  49053856 gtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagtataattttttggcagaattatgacacacaacaatgtg 49053757  T
Q  414 atttt-tgtc-ctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaa 511  Q
    ||||| |||| |||       ||||| ||||||||| ||| | ||| | |||||||| | ||| ||||| | ||||||||||||| ||||   |||||||    
T  49053756 attttatgtctctatttttcagaattcttttctgccaccataatgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaa 49053657  T
Q  512 gagttggttcatgaacggttacattgc 538  Q
    ||||| ||| ||||| |||||||||||    
T  49053656 gagtttgtttatgaatggttacattgc 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 117 - 538
Target Start/End: Complemental strand, 49061635 - 49061210
Alignment:
Q  117 aagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttatgtc 215  Q
    ||||||| |||| ||||||||||||   |||||||||||||  |||| ||||||  || | ||||   ||||||||||||||| ||| |||||||||| |    
T  49061635 aagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgcccccaccagttatgcc 49061536  T
Q  216 aactggatgcaaaagagt-atatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgata 314  Q
    |||| |||||||||| || ||| | | ||||| ||||||| |||  || |||||  |||| |||  || ||||||||||||||| |||| | ||||| ||    
T  49061535 aactagatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaaacatatcga-caatggta 49061437  T
Q  315 gtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattattttt-agcataattttgactcacaataatgtg 413  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||| |||| ||||| ||||||    
T  49061436 gtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtg 49061337  T
Q  414 atttt-tgtc-ctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaa 511  Q
    ||||| |||| |||       ||||| ||||||||| | | | ||| |||||||||| ||||| ||||| | ||| ||||||||| ||||   |||||||    
T  49061336 attttatgtctctatttttctgaattcttttctgccactataatgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaa 49061237  T
Q  512 gagttggttcatgaacggttacattgc 538  Q
    || || ||| ||||| |||||||||||    
T  49061236 gaatttgtttatgaatggttacattgc 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 151 - 414
Target Start/End: Original strand, 42263319 - 42263583
Alignment:
Q  151 ataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgt-cccaccagttatgtcaactggatgcaaaagagtatatcaatgaatctcc 249  Q
    |||| ||||||||  ||||| ||||| |||||| ||||||||||  |||| ||||||| ||||||||||   ||||||||  ||||| |  |||||| ||    
T  42263319 ataactttcaaagcatgtgtgagacacactaacctttaggttcggctcgttcccaccaattatgtcaacaaaatgcaaaatggtataacggtgaatcccc 42263418  T
Q  250 ttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtg 349  Q
    ||||||||| | || ||||  |||| |||| || ||||||| || || |||||| | ||||| || ||||||||| |||||| | || ||||| ||||||    
T  42263419 ttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtg 42263518  T
Q  350 cactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtga 414  Q
    ||||||||||||||||||||||| ||||||||||||  |||  |||||||||||||| |||||||    
T  42263519 cactagagaaaagaaagaatgatatagtattattttaggcagtattttgactcacaagaatgtga 42263583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 286 - 421
Target Start/End: Complemental strand, 50059585 - 50059450
Alignment:
Q  286 attcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttt 385  Q
    ||||||| | |||||||| ||||||||||||||| | ||||||||||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  50059585 attcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtattatttt 50059486  T
Q  386 tagcataattttgactcacaataatgtgatttttgt 421  Q
    |  || |||||||| |||||| |||||| |||||||    
T  50059485 ttacagaattttgattcacaagaatgtgttttttgt 50059450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 17458501 - 17458387
Alignment:
Q  287 ttcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattattttt 386  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||| | || |||   ||||||||||||||||| |||||||||||||||||||  ||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtattgatttt 17458402  T
Q  387 agcataattttgact 401  Q
     | | ||||||||||    
T  17458401 ggaagaattttgact 17458387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 52282037 - 52282138
Alignment:
Q  286 attcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcg--tgcactagagaaaagaaagaatgatttagtattatt 383  Q
    ||||||||||| || ||| ||||||| ||||||||| ||||||||| | |||||||| |||   |||||||||||||||||||||||||||| |||||||    
T  52282037 attcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaagaaagaatgatttaatattatt 52282136  T
Q  384 tt 385  Q
    ||    
T  52282137 tt 52282138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 419
Target Start/End: Complemental strand, 31286061 - 31285890
Alignment:
Q  248 ccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaat-gatagtttacaaaataaagttctttcaatttccctc 346  Q
    ||||||||||| | | |||||| || | |||| || ||||||| | ||| | |||| |||||| |||| |||| |||||||| |||| |||||| | | |    
T  31286061 ccttcaggatactttggaatcattgccgtgacttgaacattcatatcaagcttatcgatcaattgatactttataaaataaaattctctcaattactcgc 31285962  T
Q  347 gtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgattttt 419  Q
    || ||| |||||||||||  ||| ||||||||||||||||  |||||||||| ||||||| ||||||| ||||    
T  31285961 gttcaccagagaaaagaagaaataatttagtattattttttacataattttg-ctcacaagaatgtgactttt 31285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 513
Target Start/End: Complemental strand, 10917592 - 10917398
Alignment:
Q  305 atcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcac 404  Q
    |||||||||| |||||||||| || |||| |   || | | |||||||||||||||||||  |||||||| ||||||||||  ||| || ||||||| ||    
T  10917592 atcaatgatattttacaaaatcaaattctctggtttactcccgtgcactagagaaaagaagaaatgattttgtattattttcggcagaactttgacttac 10917493  T
Q  405 aataatgtgatttttgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacac 504  Q
    || ||||||| ||||||           | ||  ||||||||||||||||||  |||||||||||||||| ||||| | ||| ||||||||| ||||| |    
T  10917492 aagaatgtga-ttttgt-----------gtatctttttctgcctccaaagtg--tctatttatagagaaacttatgtcctttagtgaagagatacaactc 10917407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 12634557 - 12634476
Alignment:
Q  305 atcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattattttt 386  Q
    ||||||| || |||||| ||||||||||| |||||||| ||  ||||||| |||||||||| ||  ||||||||||||||||    
T  12634557 atcaatggtaatttacagaataaagttctgtcaatttctctaatgcactaaagaaaagaaaaaagcatttagtattattttt 12634476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 17458356 - 17458258
Alignment:
Q  440 tttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgc 538  Q
    |||||||||  ||||| | || ||||||||| ||| ||||| | |||||||||||||||||||   |||||||| || |||| |||| |||||||||||    
T  17458356 tttctgcctttaaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgc 17458258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 526
Target Start/End: Complemental strand, 12634416 - 12634348
Alignment:
Q  459 tctatttatagagaaatttatgcca-tttggtgaagagaaacaacactttgaaagagttggttcatgaa 526  Q
    ||||||| |||||||||||||| || ||||||||||| ||||||   ||||||||||||  ||||||||    
T  12634416 tctatttgtagagaaatttatgtcattttggtgaagataaacaattttttgaaagagtttcttcatgaa 12634348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 117 - 546
Target Start/End: Original strand, 9851300 - 9851728
Alignment:
Q  117 aagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcccaccagttatgtca 216  Q
    |||||||||||| ||||||||||||   ||||||||||||| ||||| ||||||  |||| |||||| ||||||||| ||||  || |||||||| | ||    
T  9851300 aagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttcaattctccctaccagttaagcca 9851399  T
Q  217 actggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgact-tgacatgtacattcacaccaaacgtatccatcaatgatag 315  Q
    || | ||||||||| ||||| |   ||||| |||||| ||||  || |||| ||| | | |||  || ||||||||||||| |||||| | ||||| |      
T  9851400 accgaatgcaaaagggtataccggcgaatccccttcaagatacgatggaat-acttaatgtgatttgcacattcacaccaagcgtatcga-caatggtgt 9851497  T
Q  316 tttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtg-a 414  Q
    |||||| ||||||||| | |||  ||| || ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |    
T  9851498 tttacagaataaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtattatttttggcagaattttgactcacaataatgtgaa 9851597  T
Q  415 tttttgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagag 514  Q
    ||| | ||| |       || || ||||||||||||||| ||| |||||||| ||||||| ||||| | ||||||||||||||| |||  ||||| ||||    
T  9851598 tttctatcc-atgtttctgacttcttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagag 9851696  T
Q  515 ttggttcatgaacggttacattgcttcaattg 546  Q
    || ||| ||||| ||| | |||||||||||||    
T  9851697 tttgtttatgaatggtcagattgcttcaattg 9851728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 117 - 415
Target Start/End: Complemental strand, 29006746 - 29006447
Alignment:
Q  117 aagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcccaccagttatgtca 216  Q
    |||||||| ||| |||| |||||||  |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| |||| | |||    
T  29006746 aagatgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccccactagttttatca 29006647  T
Q  217 actggatgcaaaagagt-atatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatag 315  Q
    ||  |||||||||| || ||||    |||||  |||||| |||  || |||||  |||| ||||||  ||||||||||||| ||||||  |||||| |||    
T  29006646 accagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgtatcg-tcaatgttag 29006548  T
Q  316 ttt-acaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtga 414  Q
    ||| ||| ||||||||||| |||| ||  ||||||||||||| ||||||| |||||||||||||| |||||||||| ||||| ||||||||| |||||||    
T  29006547 ttttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtga 29006448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 36203055 - 36202947
Alignment:
Q  438 attttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattg 537  Q
    |||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||||||    
T  36203055 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttacattg 36202956  T
Q  538 cttcaattg 546  Q
     ||||||||    
T  36202955 attcaattg 36202947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 441 - 544
Target Start/End: Complemental strand, 29006408 - 29006305
Alignment:
Q  441 ttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgctt 540  Q
    |||||| || ||||||| |||||||||||||||| ||||| |||||||||||| |||||||| |||| ||||| || ||||||||| |||||||||||||    
T  29006408 ttctgcttctaaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgctt 29006309  T
Q  541 caat 544  Q
    ||||    
T  29006308 caat 29006305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 114 - 364
Target Start/End: Original strand, 9080505 - 9080755
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttat 212  Q
    ||||||| ||||||  |||||||||| | ||| |||||||||||| |||| |||||| | ||| |||||  |||| |||||||||| ||| |||| || |    
T  9080505 aagaagaagatgaaaatgaacatgataaaaagggcacataaattttaaagagtgtgtga-acacactaagctttaagttcgattcgcccccaccaatttt 9080603  T
Q  213 -gtcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatg 311  Q
     ||||| | |||||||| ||||||| | | ||| | |||||| |||| | | ||||   |||| | || || |||||||||  ||||||||  |||||||    
T  9080604 tgtcaagtagatgcaaatgagtataccgacgaacc-ccttcatgatactttggaattcttgacgtaacttgcacattcacattaaacgtatagatcaatg 9080702  T
Q  312 atagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaa 364  Q
     ||||||||||||||||||||| |||||| | |||||| ||||||||||||||    
T  9080703 gtagtttacaaaataaagttctctcaattgctctcgtgtactagagaaaagaa 9080755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 15205576 - 15205481
Alignment:
Q  135 atgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgt-cccaccagttatgtcaactggatgcaaaa 229  Q
    |||||||  ||||| |||||||||||||| ||||||  |||| ||||||||| ||||||||||||| ||||||||||||| | |||||||||||||    
T  15205576 atgatgaagagtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaaaa 15205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 313 - 412
Target Start/End: Complemental strand, 26900564 - 26900465
Alignment:
Q  313 tagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgt 412  Q
    ||||||| |||||||| || | ||| ||||||||||| |||| |||||||||||| | ||||||||||||||| | || ||||||||||||||| |||||    
T  26900564 tagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcacaagaatgt 26900465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 36203321 - 36203207
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgt-cccaccagttat 212  Q
    ||||||||||||||| ||||||| ||||   ||||||||||||||||  | ||||||  | || |||||| |||| ||||||||||| ||||||||||||    
T  36203321 aagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtccccaccagttat 36203222  T
Q  213 gtcaactggatgcaa 227  Q
    | |||| ||||||||    
T  36203221 gccaaccggatgcaa 36203207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 36203162 - 36203051
Alignment:
Q  307 caatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaa 406  Q
    ||||| ||| |||||||||||||||||  ||| ||| ||||| ||||| |||| |||| |||| ||||||||| |||||  ||| ||||| ||||||||     
T  36203162 caatggtagcttacaaaataaagttctgacaaattctctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacac 36203063  T
Q  407 taatgtgatttt 418  Q
     |||||||||||    
T  36203062 caatgtgatttt 36203051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 2022672 - 2022721
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaag 163  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  2022672 aagaagatgatgaagatgaacatgatgaaatgtgcacataaatttcaaag 2022721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 11042814 - 11042884
Alignment:
Q  281 tgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgca 351  Q
    ||||| |||||| ||| |||||| |||||||||| |||||||||||||||||  |||||||| ||| ||||    
T  11042814 tgtactttcacatcaagcgtatctatcaatgataatttacaaaataaagttcagtcaatttctctcatgca 11042884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 10498180 - 10498135
Alignment:
Q  318 tacaaaataaagttctttcaatttccctcgtgcactagagaaaaga 363  Q
    ||||||||||||||||||||||| | ||||  ||||||||||||||    
T  10498180 tacaaaataaagttctttcaattactctcgcacactagagaaaaga 10498135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 15205434 - 15205357
Alignment:
Q  308 aatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttt 385  Q
    |||||||||||| | ||||||||  | | |||||| || || ||||| |||||||| | |||||||||||||||||||    
T  15205434 aatgatagtttagagaataaagtcatgttaatttctcttgttcactaaagaaaagatacaatgatttagtattatttt 15205357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 114 - 415
Target Start/End: Complemental strand, 20251674 - 20251370
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccc-accagttat 212  Q
    ||||||||||||||| ||||||||||||  ||| |||||||||||||||| ||||| |||||| |||||  ||||| ||| ||| | ||| || ||| ||    
T  20251674 aagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtg-tagacacactaatatttagattccatttgcccctactagtaat 20251576  T
Q  213 gtcaactggatgcaaaagagtatatcaatgaat-ctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatg 311  Q
    |||||| ||||||||| | |||||    ||||| | |||||||||||| || |||||| |||  || | |||||||||||| |||  ||||| |||||||    
T  20251575 gtcaaccggatgcaaaggggtatactggtgaatcccccttcaggatatgattgaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatg 20251476  T
Q  312 atagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttag-cataatttt-gactcacaataa 409  Q
    |||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||| ||||| | ||||||||| ||| ||||| ||    
T  20251475 atagtttacataataaagttctgtcaatttctctcgtgcactacagaaaagaaataatgatttagtatttttttttgacataattttagacacacaagaa 20251376  T
Q  410 tgtgat 415  Q
    ||||||    
T  20251375 tgtgat 20251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 120 - 385
Target Start/End: Original strand, 48779718 - 48779984
Alignment:
Q  120 atgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtccca-ccagttatgtcaac 218  Q
    ||||| ||| ||||||||||||   ||||| ||||||||||||| ||||||  || | |||||| |||| |||||||||| | |  ||||||||| |||     
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaat 48779817  T
Q  219 tggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagttt 318  Q
    |||||||||||| |||||||  |||||| ||||||||||| |||  ||||| |||| |||| || ||||||||||||| | |||| ||||||||||||||    
T  48779818 tggatgcaaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagttt 48779917  T
Q  319 acaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttt 385  Q
    | | ||||||||| | ||| |||   ||||||||||||||||| || |||||||||| |||||||||    
T  48779918 agagaataaagttatgtcagtttatgtcgtgcactagagaaaataatgaatgatttaatattatttt 48779984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 286 - 545
Target Start/End: Original strand, 24129368 - 24129627
Alignment:
Q  286 attcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttt 385  Q
    |||||||||||||| |||  |  ||||||||||||| ||||||||| | ||||||||   ||||||||||||||||||||||| ||||||||||||||||    
T  24129368 attcacaccaaacgcatcggttgatgatagtttacataataaagttatgtcaatttcttccgtgcactagagaaaagaaagaaagatttagtattatttt 24129467  T
Q  386 tagcataattttgactcacaataatgtgatttttgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatt 485  Q
    |  |  ||||| ||||||||| |||||||| ||    |||        | ||||||| |||||||| ||||| |||||||||||||||| ||||| ||||    
T  24129468 tgacggaatttagactcacaaaaatgtgatgttctatctaattttcttacttattttttgcctccagagtgtctctatttatagagaaacttatgtcatt 24129567  T
Q  486 tggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgcttcaatt 545  Q
    |||| |||  ||| |||  |||| ||||||| ||||||||| ||||||||||||||||||    
T  24129568 tggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattgcttcaatt 24129627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 24391923 - 24391833
Alignment:
Q  288 tcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtat 379  Q
    |||||||||||||||| | ||||||||||||||| ||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||    
T  24391923 tcacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatgcactagagaaaagaaagaatgatttagtat 24391833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 47078080 - 47078155
Alignment:
Q  305 atcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtatt 380  Q
    ||||||| ||||||||| ||||||||||| |||||||| ||||| ||||| | |||||||||||||||||||||||    
T  47078080 atcaatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagtatt 47078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 1494951 - 1495056
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaag-agttggttcatgaacggttacattg 537  Q
    |||| |||||||||| ||| ||| |||||||||||| ||||| |||||||||||  |||||||  ||||||||| | || ||||||||| ||||| ||||    
T  1494951 ttttatgcctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattg 1495050  T
Q  538 cttcaa 543  Q
    ||||||    
T  1495051 cttcaa 1495056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 415
Target Start/End: Original strand, 27538127 - 27538247
Alignment:
Q  295 aaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataat 394  Q
    |||| |||| ||||||||  ||||||| ||| ||||| | |||||||| ||  |||| ||||||||  |||||||||||||||||||||||  ||| |||    
T  27538127 aaacatatcgatcaatgaccgtttacagaattaagttatgtcaatttctcttatgcattagagaaattaaagaatgatttagtattattttcggcagaat 27538226  T
Q  395 tttgactcacaataatgtgat 415  Q
    ||| || ||||| ||||||||    
T  27538227 tttcacccacaagaatgtgat 27538247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 538
Target Start/End: Original strand, 1516510 - 1516609
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgc 538  Q
    |||| |||||| ||| ||| ||||||| |||||||| ||||| |||||||||||  |||| ||| |||||||||| || ||||||||| ||||| |||||    
T  1516510 ttttatgcctcaaaaatgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgc 1516609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 538
Target Start/End: Original strand, 1533060 - 1533135
Alignment:
Q  463 tttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgc 538  Q
    |||||||||||| ||||| |||||| ||||| |||||||| |||||||||| || |||||| || ||||| |||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattgc 1533135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 545
Target Start/End: Complemental strand, 20251334 - 20251229
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgc 538  Q
    ||||||||||| ||| | ||| |||||||||||||| ||||| | |||||| |||| |||||||  ||| | |||||| |||||||||  |||||||||     
T  20251334 ttttctgcctcaaaaatatttttatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgt 20251236  T
Q  539 ttcaatt 545  Q
    |||||||    
T  20251235 ttcaatt 20251229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 25328605 - 25328686
Alignment:
Q  295 aaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttag 376  Q
    ||||||||| | || ||||||||||||||||||| |||| |||||| | ||  |||| ||||||||||||  ||||||||||    
T  25328605 aaacgtatcaaacagtgatagtttacaaaataaatttctctcaattactctactgcattagagaaaagaagaaatgatttag 25328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 546
Target Start/End: Original strand, 48780035 - 48780147
Alignment:
Q  434 aattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttg-aaagagttggttcatgaacggtta 532  Q
    |||||||||||||||||||||| | | |||||||||| ||| | | | | ||||||| ||||||||||| ||||| ||||| ||  ||||||||  ||||    
T  48780035 aattattttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaac-ctttgaaaagaatttattcatgaatagtta 48780133  T
Q  533 cattgcttcaattg 546  Q
     |||||||||||||    
T  48780134 tattgcttcaattg 48780147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 3415643 - 3415594
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaag 163  Q
    ||||||||||||||| ||||||||||||   ||||||||||||| |||||    
T  3415643 aagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaag 3415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 18670554 - 18670603
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaag 163  Q
    ||||||||||| ||| ||||||||||||   |||||||||||||||||||    
T  18670554 aagaagatgataaagatgaacatgatgaagtgtgcacataaatttcaaag 18670603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 114 - 546
Target Start/End: Original strand, 12239475 - 12239908
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcg-tcccaccagttat 212  Q
    ||||||||||||| | |||| |||||||   ||||||||||||||||||| ||||||  |||| | |||| |||||||||||||||  ||||||||||||    
T  12239475 aagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgcccccaccagttat 12239574  T
Q  213 gtc-aactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatg 311  Q
    ||| ||| ||||||||||| |||| ||   ||||| |||||||||||  ||  ||||  |||| |||| || ||||||||||||| |||||| | |||||    
T  12239575 gtcaaaccggatgcaaaagggtatgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcacaccaagcgtatcga-caatg 12239673  T
Q  312 atagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatg 411  Q
     |||||| || ||||||||| | |||||||  || ||  |||||||| |||||||||| ||||| |||||||||  ||| |||| | || ||||| ||||    
T  12239674 gtagtttccagaataaagttttgtcaatttatctagtatactagagataagaaagaataatttaatattattttcggcagaattctaacacacaacaatg 12239773  T
Q  412 tgatttttgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaa 511  Q
    |||||||    |||        |||| |||||| |||||||||||| | |||||||||||||| ||||  | |||| | |||||   ||||  |||||||    
T  12239774 tgattttctatctatatttcttaattcttttctacctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaa 12239873  T
Q  512 gagttggttcatgaacggttacattgcttcaattg 546  Q
    ||||| ||||||||| ||||||||||| |||||||    
T  12239874 gagtttgttcatgaatggttacattgcatcaattg 12239908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 256 - 507
Target Start/End: Original strand, 34091467 - 34091719
Alignment:
Q  256 atattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactag 355  Q
    |||||||||||||  |||| |||| || ||||||||||||| |||||  || |||| ||||||||||| ||||||||| |||||||| ||| |||| |||    
T  34091467 atattatagaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattag 34091566  T
Q  356 agaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttttgtc-ctannnnnnngaattattttctgcctccaaag 454  Q
    ||||||||| |||||||||| |||||||||  ||  |||||||||||| |||||||||||||||||| |||       ||||  ||||||| |||  |||    
T  34091567 agaaaagaatgaatgatttaatattattttcggcggaattttgactcataataatgtgatttttgtctctatttttctgaatatttttctgtctctcaag 34091666  T
Q  455 tgtttctatttatagagaaatttatgccatttggtgaagagaaacaacacttt 507  Q
    ||| | |||||||| |||||||||||   |||| |||| ||||||||| ||||    
T  34091667 tgtctttatttataaagaaatttatgatctttgatgaacagaaacaactcttt 34091719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 290 - 406
Target Start/End: Complemental strand, 24870505 - 24870389
Alignment:
Q  290 acaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagc 389  Q
    ||||||| |||||  ||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||||| | |||||||||||||||| ||    
T  24870505 acaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtattatttttggc 24870406  T
Q  390 ataattttgactcacaa 406  Q
    | ||||||| |||||||    
T  24870405 agaattttgtctcacaa 24870389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 37469141 - 37469058
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgatt 197  Q
    ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||  |||| |||||| |||||||| ||||    
T  37469141 aagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgggacacactaacctttaggtttgatt 37469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 415
Target Start/End: Complemental strand, 1840741 - 1840614
Alignment:
Q  287 ttcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattattttt 386  Q
    |||||||||||  |||| ||||||||||||||||| ||||||| ||| |||||||| ||| |||| | |||||||||||| || ||||||||||| ||||    
T  1840741 ttcacaccaaatatatcgatcaatgatagtttacataataaagatctgtcaatttctctcatgcatttgagaaaagaaag-attatttagtattactttt 1840643  T
Q  387 agcataattttgactcacaataatgtgat 415  Q
     ||| |  ||||| ||| || ||||||||    
T  1840642 ggcagatctttgattcaaaagaatgtgat 1840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 20464195 - 20463987
Alignment:
Q  178 actaacttttaggttcgattcgtccc-accagttatgtcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgactt 276  Q
    ||||| |||||||||||||||||||| || |||||||||||  ||||| ||||  ||||| |    |||||| ||||  ||||| || ||||  | ||      
T  20464195 actaatttttaggttcgattcgtccccactagttatgtcaatcggatgaaaaatggtataccggcaaatctctttcaaaatattttaaaatccttaacga 20464096  T
Q  277 gacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttag 376  Q
    ||| || ||||||||||||| | |||| ||||||||| ||||  |||||||| |||| |||||||| ||||| || ||||| ||  ||| ||||||||||    
T  20464095 gacttgcacattcacaccaagcatatcgatcaatgattgtttgtaaaataaatttctgtcaatttctctcgtacattagagtaagtaaataatgatttag 20463996  T
Q  377 tattatttt 385  Q
    |||||||||    
T  20463995 tattatttt 20463987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 24871475 - 24871395
Alignment:
Q  335 tcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgat 415  Q
    |||||| | ||||||||||  |||||||| ||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  24871475 tcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgat 24871395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 114 - 313
Target Start/End: Original strand, 23757023 - 23757222
Alignment:
Q  114 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtgttagacaaactaacttttaggttcgattcgtcccaccagttatg 213  Q
    ||||| ||||||||| ||||||||||||  |||| ||||||||| | |||| | |||  |||| |||||||||||||||||||||  || |||| ||| |    
T  23757023 aagaaaatgatgaagatgaacatgatgaagagtgaacataaattccgaagtttatgtgtgacatactaacttttaggttcgattcaccctaccaattaag 23757122  T
Q  214 tcaactggatgcaaaagagtatatcaatgaatctccttcaggatattatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatgat 313  Q
      |||  |||||||||| |||||     ||||| |||||| |||| ||| | | |  |||| ||||||  |||||||||||||||||||| |||||||||    
T  23757123 ctaaccagatgcaaaagggtatactggcgaatccccttcaagataatatgggacccttgacgtgacattcacattcacaccaaacgtatcaatcaatgat 23757222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 30108282 - 30108344
Alignment:
Q  356 agaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatttt 418  Q
    |||||||||  |||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  30108282 agaaaagaagaaatgatttagtattattttcggcataatgttgactcacaagaatgtgatttt 30108344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 24533441 - 24533342
Alignment:
Q  324 ataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgat---ttagtattatttttagcataattttgactcacaataatgtgatttttg 420  Q
    |||| |||||||||||| | || ||||||||||||||||||||||| ||   ||||||| |||||  ||| || ||||||||| || |||||||||||||    
T  24533441 ataatgttctttcaattactcttgtgcactagagaaaagaaagaataatttattagtataattttcggcaaaactttgactcataa-aatgtgatttttg 24533343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 534
Target Start/End: Complemental strand, 1840589 - 1840494
Alignment:
Q  440 tttctgcctccaaagtgtttctatttatagagaaatttatg-ccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttaca 534  Q
    |||||||||||||| ||| |||||||||||||||| ||||| || |||| |||||| | |||||  |||  |||| || ||||||||| |||||||    
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttaca 1840494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 542
Target Start/End: Complemental strand, 24870375 - 24870272
Alignment:
Q  439 ttttctgcctccaaagtgtttctatttatagagaaatttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaacggttacattgc 538  Q
    |||| |||||||||||||| |||||||||||||||| ||||| | |   ||||||||||| |||  |||  ||||||| ||| || |||||||| | |||    
T  24870375 ttttatgcctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagactgc 24870276  T
Q  539 ttca 542  Q
    ||||    
T  24870275 ttca 24870272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 30276205 - 30276278
Alignment:
Q  165 gtgtgttagacaaactaacttttaggttcgattcgtccc-accagttatgtcaactggatgcaaaagagtatat 237  Q
    |||||| ||||| |||||  |||||||| |||||||||| ||||||| | ||||||||||||||| || |||||    
T  30276205 gtgtgtgagacacactaaactttaggtttgattcgtccctaccagttttatcaactggatgcaaatgattatat 30276278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 546
Target Start/End: Complemental strand, 24533286 - 24533238
Alignment:
Q  498 acaacactttgaaagagttggttcatgaacggttacattgcttcaattg 546  Q
    ||||| ||||||||| ||| ||||||||| |||||||||||| ||||||    
T  24533286 acaaccctttgaaagtgtttgttcatgaatggttacattgctacaattg 24533238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 496
Target Start/End: Original strand, 30108361 - 30108409
Alignment:
Q  448 tccaaagtgtttctatttatagagaaatttatgccatttggtgaagaga 496  Q
    |||||| ||||||||||||||||||| |||||| | |||| ||||||||    
T  30108361 tccaaaatgtttctatttatagagaattttatgacctttgctgaagaga 30108409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 284 - 526
Target Start/End: Complemental strand, 217842 - 217603
Alignment:
Q  284 acattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaatttccctcgtgcactagagaaaagaaagaatgatttagtattatt 383  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||| |||||  ||||||| |||||| ||||||||||||||||||| |||||| ||||||    
T  217842 acattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaattatttagaattatt 217743  T
Q  384 tttagcataattttgactcacaataatgtgatttttgtcctannnnnnngaattattttctgcctccaaagtgtttctatttatagagaaatttatgcca 483  Q
    ||  ||| |||| |||| ||||| |||||||||||| |  ||       ||||||||||||||||| ||||||  |||||||||||||||| ||||| ||    
T  217742 ttcggcagaattctgacacacaacaatgtgatttttat-ttatacttttgaattattttctgcctctaaagtg--tctatttatagagaaacttatgtca 217646  T
Q  484 tttggtgaagagaaacaacactttgaaagagttggttcatgaa 526  Q
    |||||| |||| |||||||  |||||||||||| || ||||||    
T  217645 tttggtaaagataaacaaccttttgaaagagtttgtccatgaa 217603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 217999 - 217947
Alignment:
Q  117 aagatgatgaaggtgaacatgatgacaagtgcacataaatttcaaagtgtgtg 169  Q
    |||||||||||| ||||||| ||||  |||||||||||||| |||||||||||    
T  217999 aagatgatgaagatgaacataatgaatagtgcacataaattccaaagtgtgtg 217947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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