View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-17 (Length: 107)
Name: Tnk88-32-LTR4-TNT-insertion-17
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-17 |
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| [»] scaffold0173 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 34285608 - 34285703
Alignment:
| Q |
8 |
atagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattcc----ttatttgtttttgagggaagctttatttaaatta |
99 |
Q |
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| T |
34285608 |
atagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattccttaattatttgtttttgagggaagctttatttaaatta |
34285703 |
T |
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Target: scaffold0173 (Bit Score: 46; Significance: 9e-18; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 13347 - 13420
Alignment:
| Q |
8 |
atagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattccttatttgtttttgagggaa |
84 |
Q |
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| T |
13347 |
atagaaagaacaa--ctgttaattgaattcagc-tttcgtatttctaatatatattccttatttgtttttgagggaa |
13420 |
T |
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