View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-18 (Length: 321)
Name: Tnk88-32-LTR4-TNT-insertion-18
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-18 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 12605011 - 12605316
Alignment:
| Q |
8 |
actcagccgaatcacctatccatatgacaattctccttgtgacgcaactaaattgtcgacaccatacatcagctcttttggtgcaacaccatagatgaat |
107 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
12605011 |
actcagccgaatcacctatctatatgacaattctccttatgacgcaactaaattgtcgacacgatacatcagctcttttggtgcaacaccataaatgaat |
12605110 |
T |
|
| Q |
108 |
gagaaaaattaaaggtattttgatggactgaacaatattcaagaccataaaggtattttgatgcaactcttaatgaggcagtgaagatagatagtagttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12605111 |
gagaaaaattaaaggtattttgatggactgaacaatattcaacaccataaaggtattttgatgcaactcttaatgaggcagtgaagatagatagtagttc |
12605210 |
T |
|
| Q |
208 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaat--nnnnnnnncgtctaaagaaatgcatatgaattaaagttgataagctcatga |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
12605211 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaataaaataaaaacgtctaaagaaatgcatatgaattaaagttgataagctcagga |
12605310 |
T |
|
| Q |
306 |
agaatt |
311 |
Q |
| |
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|||||| |
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|
| T |
12605311 |
agaatt |
12605316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 50361593 - 50361512
Alignment:
| Q |
8 |
actcagccgaatcacctatccatatgacaattctccttgtgacgcaactaaattgtcgacaccatacatcagctcttttggt |
89 |
Q |
| |
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|||||||||||||||||| ||||| |||||| |||||| |||| | |||||||||| |||| |||||||||||||||||| |
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| T |
50361593 |
actcagccgaatcacctacccatacgacaatcctccttatgactcggctaaattgtcagcaccgtacatcagctcttttggt |
50361512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 50361464 - 50361352
Alignment:
| Q |
199 |
tagtagttctttatagagcagttaagttatgcaaaaattaaa-gtcagaaataaaatnnnnnnnncgtctaaagaaatgcatatgaattaaagttgataa |
297 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||| ||||| ||| ||||||||| | ||||||||||||||||| |||||||||||||| |
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| T |
50361464 |
tagtagttctttatagagctgttaagatatgcaaaagttaaaagtcgaaaataaaataaaaaaa-catctaaagaaatgcatatagattaaagttgataa |
50361366 |
T |
|
| Q |
298 |
gctcatgaagaatt |
311 |
Q |
| |
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||||| ||| |||| |
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| T |
50361365 |
gctcaggaacaatt |
50361352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 52590213 - 52590130
Alignment:
| Q |
138 |
aacaatattcaagaccataaaggtattttgatgcaactctta-atgaggcagtgaagatagatagtagttctttatagagcagt |
220 |
Q |
| |
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|||||||| || ||||| ||| ||||||||||||||||||| ||| |||| ||||| ||||| || |||||||||||||||| |
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| T |
52590213 |
aacaatatccagcaccattaagatattttgatgcaactcttatttgaagcagggaagagagataataattctttatagagcagt |
52590130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 10451898 - 10451594
Alignment:
| Q |
8 |
actcagccgaatcacctatccatatgacaattctccttgtgacgcaactaaattgtcgacaccatacatcagctcttttggtgcaacaccatagatgaat |
107 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10451898 |
actcagtcgaatcacctatccatatgacaagtctccttatgacgcgactaaattgtcgacaccatacatcagctcttttggtgcaacaccataaatgaat |
10451799 |
T |
|
| Q |
108 |
gagaaaaattaaaggtattttgatggactgaacaatattcaagaccataaaggtattttgatgcaactcttaatgaggcagtgaagatagatagtagttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10451798 |
gagaaaaattaaaggtattttgatggactgaacaatattcaacaccataaaggtattttgatgcaactcttaatgagacagtgaagatagatagtagttc |
10451699 |
T |
|
| Q |
208 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaat-nnnnnnnncgtctaaagaaatgcatatgaattaaagttgataagctcatgaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10451698 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaatataaaaaaacgtctaaagaaatgcatatgaattaaagttgataagctcatgaa |
10451599 |
T |
|
| Q |
307 |
gaatt |
311 |
Q |
| |
|
||||| |
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|
| T |
10451598 |
gaatt |
10451594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 30997887 - 30998193
Alignment:
| Q |
8 |
actcagccgaatcacctatccatatgacaattctccttgtgacgcaactaaattgtcgacaccatacatcagctcttttggtgcaacaccatagatgaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||| |||||| |
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|
| T |
30997887 |
actcagccgaatcacctatccatatgacaattctccttatgacgcagttaaattgtcaacaccatacatcagctcatttggtgtaacaccataaatgaat |
30997986 |
T |
|
| Q |
108 |
gagaaaaattaaaggtattttgatggactgaacaatattcaagaccataaaggtattttgatgcaactcttaatgaggcagtgaagatagatagtagttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30997987 |
gagaaaaattaaaggtattttgatggactgaacaatattcaacaccataaaggtattttgatgcaactcttaatgagacagtgaagatagatagtagttc |
30998086 |
T |
|
| Q |
208 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaat---nnnnnnnncgtctaaagaaatgcatatgaattaaagttgataagctcatg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |
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| T |
30998087 |
tttatagagcagttaagttatgcaaaaattaaagtcagaaataaaataaaaaaaaaaacgtctaaagaaatgcatatgaattaaagttgataagctgagg |
30998186 |
T |
|
| Q |
305 |
aagaatt |
311 |
Q |
| |
|
||||||| |
|
|
| T |
30998187 |
aagaatt |
30998193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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