View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-21 (Length: 582)
Name: Tnk88-32-LTR4-TNT-insertion-21
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-21 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 104 - 572
Target Start/End: Original strand, 47322051 - 47322533
Alignment:
| Q |
104 |
tcttgtcattgcctcctttggttgttgcaaaagtgagttaattgttgctgaatatcatctgggttgtttggcgaggaagaaccaatgttgttggtgtatg |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322051 |
tcttgtcattgcctcctttggttgttgcaaaagtgagttaaatgttgctgaatatcatctgggttgtttggcgaggaagaaccaatgttgttggtgtatg |
47322150 |
T |
|
| Q |
204 |
ctaagtaccatagagcttcactatccaatggctaaaaattactatgataccccctctgcggttgattgttcccctttcctctaccacatctctccttcac |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322151 |
ctaagtaccatagagcttcactatccaatggctaaaaattactatgatactccctctgcggttgattgttcccctttcctctaccacatctctccttcac |
47322250 |
T |
|
| Q |
304 |
atgcaaccttcttcctcaacactcctccgccgcgtgagttccgaccaccactgttgaagcgaaacacaatctccacaacgaaaaagcttccttactttcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47322251 |
atgcaaccttcttcctcaacactcctccgccgcgtgagttccgaccaccactgttgaagcgaaacacaatctccacaacgaaaaagcttccttactttcc |
47322350 |
T |
|
| Q |
404 |
ctcctcaaccttctcgaagctccaataccgacgcttgcttcaacttcacctcacacctgta--------------annnnnnnnncttcaatggttggta |
489 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
47322351 |
ctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgtaatttttttattaagaattttttttcttcaatggttggta |
47322450 |
T |
|
| Q |
490 |
gatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtgttgaatcaaagcaatt |
572 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47322451 |
gatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtgttgaatcagagcaatt |
47322533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 104 - 572
Target Start/End: Original strand, 47336847 - 47337329
Alignment:
| Q |
104 |
tcttgtcattgcctcctttggttgttgcaaaagtgagttaattgttgctgaatatcatctgggttgtttggcgaggaagaaccaatgttgttggtgtatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336847 |
tcttgtcattgcctcctttggttgttgcaaaagtgagttaaatgttgctgaatatcatctgggttgtttggcgaggaagaaccaatgttgttggtgtatg |
47336946 |
T |
|
| Q |
204 |
ctaagtaccatagagcttcactatccaatggctaaaaattactatgataccccctctgcggttgattgttcccctttcctctaccacatctctccttcac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336947 |
ctaagtaccatagagcttcactatccaatggctaaaaattactatgatactccctctgcggttgattgttcccctttcctctaccacatctctccttcac |
47337046 |
T |
|
| Q |
304 |
atgcaaccttcttcctcaacactcctccgccgcgtgagttccgaccaccactgttgaagcgaaacacaatctccacaacgaaaaagcttccttactttcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47337047 |
atgcaaccttcttcctcaacactcctccgccgcgtgagttccgaccaccactgttgaagcgaaacacaatctccacaacgaaaaagcttccttactttcc |
47337146 |
T |
|
| Q |
404 |
ctcctcaaccttctcgaagctccaataccgacgcttgcttcaacttcacctcacacctgta--------------annnnnnnnncttcaatggttggta |
489 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
47337147 |
ctcctcaaccttctcgaagctccaataccaacgcttgcttcaacttcacctcacacctgtaatttttttattaagaattttttttcttcaatggttggta |
47337246 |
T |
|
| Q |
490 |
gatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtgttgaatcaaagcaatt |
572 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47337247 |
gatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatctgtgttgaatcagagcaatt |
47337329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 40337112 - 40337186
Alignment:
| Q |
275 |
ccctttcctctaccacatctctccttcacatgcaaccttcttcctcaacactcctccgccgcg-tgagttccgaccacc |
352 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||| |
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| T |
40337112 |
ccctttcctctaccacatctctccttca----caaccttcttcctcaaccctcctccgtcgcgctgagttccgaccacc |
40337186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 366 - 572
Target Start/End: Complemental strand, 24668461 - 24668244
Alignment:
| Q |
366 |
aacacaatctccacaacgaaaaagcttccttactttccctcctcaaccttctcgaagctccaataccgacgcttgcttcaacttcacctcacacctgtaa |
465 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24668461 |
aacacaatctccactacaaaaaagcttccttactttccctcctcaaccttctcgaagctccaataccagagcttgcttcaacttcacctcacacctgtaa |
24668362 |
T |
|
| Q |
466 |
------------nnnnnnnnncttcaatggttggtagatcatgatggatctattgatgattatgggtttgatatatgtggaaggtaccaatacatgatct |
553 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
24668361 |
tttttttaagattttgtttttcttcaatggttggtagatcatgatggatcaattgatgattatgggtttgatatatgttgaaggtaccaatacat-atct |
24668263 |
T |
|
| Q |
554 |
gtgttgaatcaaagcaatt |
572 |
Q |
| |
|
|| ||||||||||| |||| |
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|
| T |
24668262 |
gtcttgaatcaaagtaatt |
24668244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 46950810 - 46950950
Alignment:
| Q |
243 |
tactatgataccccctctgcggttgattgttcc--cctttcctctaccacatctctccttcacatgcaaccttcttcctcaacactcctccgccgcg-tg |
339 |
Q |
| |
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|||||| |||| || ||||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| || |
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| T |
46950810 |
tactataatactccatctgcagttgattgtttctccctttcctctaccacatctctccttgacgtgcaaccttcttcctcaaccctcctccgccgcgctg |
46950909 |
T |
|
| Q |
340 |
agttccgaccacc--actgtt-gaagc-gaaacacaatctc |
376 |
Q |
| |
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||||||||||||| |||||| ||||| ||||||||||||| |
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|
| T |
46950910 |
agttccgaccaccgtactgttggaagcggaaacacaatctc |
46950950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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