View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-4 (Length: 386)
Name: Tnk88-32-LTR4-TNT-insertion-4
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 3688963 - 3689330
Alignment:
| Q |
9 |
gatgaccctcacactggcagacatgttcgtctaatatccatatggcatggtggaagagatacttttggaggttgacaagttcatttttcttgaggatttt |
108 |
Q |
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| T |
3688963 |
gatgaccctcacactggcagacatattcgtctaatatccatatggcatggtggaagagatacttttggaggttgacaagttcatttttcttgtggatttt |
3689062 |
T |
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| Q |
109 |
gcgatacttgatatggaagaagactatgattgtctgcttctgttgggtaatctattcttggcaacatgaagtgaaatgatagatgtgaaattgagagatc |
208 |
Q |
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| T |
3689063 |
gtgatacttgatatggaagaagactatgattgtctgcttctgttgggtaatctattcttggcaacatgaagtgaaatgatagatgtgaaattgagagatc |
3689162 |
T |
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| Q |
209 |
aaatgttgtgattcaaatatgagcaagtcacttttaaagtgtttaatgcattgaaattccccaacgagcaagattagtgctataaaatcgatgtgttgga |
308 |
Q |
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| T |
3689163 |
aaatgttgtgattcaaatatgagcaagtaacttttaaagtgtttaatgcattgaaattccccaacgagcaagattagtgctataaaatcgatgtgttgga |
3689262 |
T |
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| Q |
309 |
agagtttctaattgaattggcctaaaagaaagcttcctttcacccacatgaaagggagatcatgaatt |
376 |
Q |
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| T |
3689263 |
agagtttctaattgaattggcctaaaagaaagcttcctttcacccacatgaaagggggatcatgaatt |
3689330 |
T |
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