View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-5 (Length: 573)
Name: Tnk88-32-LTR4-TNT-insertion-5
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 565
Target Start/End: Complemental strand, 38811243 - 38810686
Alignment:
| Q |
10 |
ttcctcaaacttgttatatatatgacttgtgagggttgctaatttcgaccaatataaaaacattaacgtataagttagcaaatgtgcgcatttttatttg |
109 |
Q |
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| T |
38811243 |
ttcctcaaacttgttatatatatgacttgtgagggttgctaatttcgaccaatataaaaacattaacgtataagttaacaagtgtgcgcatttttatttg |
38811144 |
T |
|
| Q |
110 |
gatataaaaatct--taccactagtttaagttagttataactagttatagtttattgtttttaggttggtctaagttaggcctcagtatatatgttgaac |
207 |
Q |
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| T |
38811143 |
gacataaaaatctcttaccactagtttaagttagttataactagttctaatttaatgtttttaggttggtctaagttagacctcagtatatatgttgaac |
38811044 |
T |
|
| Q |
208 |
tcatattctaattgatcgaacaaacttacccttactatctccctnnnnnnnnnnnnnctttccctctttaggaaagtttccaatatttgagaaaaagaaa |
307 |
Q |
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| T |
38811043 |
tcatattctaattgatcgaacaaacttacccttactatctccctaaaaaataaaaa-ctttccctctttaggaaagtttccaatatttgagaaaaagaaa |
38810945 |
T |
|
| Q |
308 |
ataccatatatattaaaggatgatggtggagtaaacagttttttg-atgatataatactttataagggacaactttatgttatggatgataaaggaacaa |
406 |
Q |
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| T |
38810944 |
ataccatatatattaaaggatgatggtggagtaaacatttttttttatgatataatactttataatggacaactttatgttatggatgataaatgaacaa |
38810845 |
T |
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| Q |
407 |
ttttctagataaatgctttgtccttgaagttggttcaattttcaccaaaaaacttgtcctgttgtgacaaaaagagacatataagggtgaactgtgatac |
506 |
Q |
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| T |
38810844 |
ttttctagataaatgctttgtccttgaagttggttcaattttcaccaaaaaacttgtcctgttgtgacaaaaagaggcatataagggtgaactgtgatac |
38810745 |
T |
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| Q |
507 |
aaaaaataagcaattagtagagtacaatgaaagtctttatgtggttgatttgtatatta |
565 |
Q |
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| T |
38810744 |
aaaaaacaagaaattagtagagtacaatgaaagtctttatgtggttgatttgtatatta |
38810686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 283 - 563
Target Start/End: Complemental strand, 38813650 - 38813373
Alignment:
| Q |
283 |
gtttccaatatttgagaaaaagaaaataccatatatattaaaggatgatggtggagtaaacagtt-ttttgatgatataatactttataagggacaactt |
381 |
Q |
| |
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| T |
38813650 |
gtttccaatattggagaaaaggaaaatatcatgt----taaatgatgattgtagagaaaacaaatattttgatgatataatacattacaagggacaactt |
38813555 |
T |
|
| Q |
382 |
tatgttatggatgataaaggaacaattttctagataaatgctttgtccttgaagttggttcaattttcaccaaaaaacttgtcctgttgtgacaaaaaga |
481 |
Q |
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| T |
38813554 |
tatgttgtggataaaatgggaacaattttctggatcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctgaaaata |
38813455 |
T |
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| Q |
482 |
gacatataagggtgaactgtgatacaaaaaataagcaattagtagagtacaatgaaagtctttatgtggttgatttgtatat |
563 |
Q |
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| T |
38813454 |
ggcatataagggtgaattctaacataaacaagaagcaattagtagagtatgatggaggtctatatgtggttgatttatatat |
38813373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 461
Target Start/End: Complemental strand, 38825504 - 38825373
Alignment:
| Q |
326 |
gatgatggtggagtaaaca-gttttttgatgatataatactttataagggacaactttatgttatggatgataaaggaacaattttctagataaat---g |
421 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||| |||||| |||| ||||| | | ||||||||||||| ||||||| | |
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| T |
38825504 |
gatgatggtggagaaaacaagtattttgatgatataatactttacaaggga--------tgttgtggataaaatgggaacaattttctggataaataatg |
38825413 |
T |
|
| Q |
422 |
ctttgtccttgaagttggttcaattttcaccaaaaaactt |
461 |
Q |
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| T |
38825412 |
ctttatccttaaagttggttcagttttcaccaaaaaactt |
38825373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 497
Target Start/End: Original strand, 35520777 - 35520926
Alignment:
| Q |
348 |
ttttgatgatataatactttataagggacaactttatgttatggatgataaaggaacaattttctagataaatgctttgtccttgaagttggttcaattt |
447 |
Q |
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| T |
35520777 |
ttttgatgatatgatactttacaagggccaactttatgttgtggataaaatgggaacaatattctggttccatgctttgtctttcaagttggttcagttt |
35520876 |
T |
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| Q |
448 |
tcaccaaaaaacttgtcctgttgtgacaaaaagagacatataagggtgaa |
497 |
Q |
| |
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||||| |||||||||| ||||||||| |||| | |||||||||||||| |
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| T |
35520877 |
tcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaa |
35520926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 565
Target Start/End: Complemental strand, 35548873 - 35548659
Alignment:
| Q |
351 |
tgatgatataatactttataagggacaactttatgttatggatgataaaggaacaattttctagataaatgctttgtccttgaagttggttcaattttca |
450 |
Q |
| |
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|||||||||||| ||| | | || ||||||||||||| ||||||| || || |||||||||| ||| ||| ||||| | |||||||||||||| |||||| |
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| T |
35548873 |
tgatgatataattcttcacagggaacaactttatgttgtggatgaaaacgggacaattttctggatcaatcctttgactttgaagttggttcagttttca |
35548774 |
T |
|
| Q |
451 |
ccaaaaaacttgtcctgttgtga---caaaaagagacatataagggtgaactgtgatacaaaaaataagcaattagtagagtacaatgaaagtctttatg |
547 |
Q |
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| T |
35548773 |
cc---aaagttgtactgttgtgataggaataagaagcacatatgggtgaaatctgataaaaagaagaagcagttagtagaatatgatggaaatctctatg |
35548677 |
T |
|
| Q |
548 |
tggttgatttgtatatta |
565 |
Q |
| |
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| T |
35548676 |
tggttgatttgtatatta |
35548659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 31612304 - 31612248
Alignment:
| Q |
64 |
taaaaacattaacgtataagttagcaaatgtgcgcatttttatttggatataaaaat |
120 |
Q |
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|||||||||||| || |||||||||||||||| | |||||||||||| | |||||| |
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| T |
31612304 |
taaaaacattaaggtctaagttagcaaatgtgtacctttttatttggacaaaaaaat |
31612248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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