View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-7 (Length: 242)
Name: Tnk88-32-LTR4-TNT-insertion-7
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 2511921 - 2512065
Alignment:
| Q |
4 |
aacaacaataacagccaaaccttaacacatgaaatggatgaactaaataaacaaagattttagaaaatcatctcacaaaatcaaatatgattgtgaacta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2511921 |
aacaacaataacagccaaaccttaacacatgaaatggatgaactaaataaacaaagattttagaaaatcatctcacaaaatcaaatatgattgtgaacta |
2512020 |
T |
|
| Q |
104 |
tataaaacaaaatgtaggatgagagaactcataactcctactaac |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512021 |
tataaaacaaaatgtaggatgagagaactcataactcctactaac |
2512065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 2512117 - 2512159
Alignment:
| Q |
200 |
gatagctatttctcaagttgtggaatccatcgatcaatcatta |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512117 |
gatagctatttctcaagttgtggaatccatcgatcaatcatta |
2512159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University