View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-32-LTR4-TNT-insertion-8 (Length: 68)

Name: Tnk88-32-LTR4-TNT-insertion-8
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-32-LTR4-TNT-insertion-8
Tnk88-32-LTR4-TNT-insertion-8
[»] chr5 (3 HSPs)
chr5 (6-58)||(13676232-13676287)
chr5 (10-50)||(4736822-4736863)
chr5 (10-50)||(37282209-37282250)
[»] chr4 (1 HSPs)
chr4 (18-47)||(7683584-7683613)
[»] chr2 (1 HSPs)
chr2 (10-50)||(1297704-1297745)
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-58)||(66066-66098)
[»] chr1 (1 HSPs)
chr1 (10-49)||(2615442-2615481)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 13676287 - 13676232
Alignment:
Q  6 caacttttagttatcacatgctaaaatactcc---taaaaaataagtgtgtgaatt 58  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  13676287 caacttttagttatcacatgctaaaatactccttttaaaaaataagtgtgtgaatt 13676232  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 4736822 - 4736863
Alignment:
Q  10 ttttagttat-cacatgctaaaatactcctaaaaaataagtg 50  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  4736822 ttttagttattcacttgctaaaatactcctaaaaaataagtg 4736863  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 37282209 - 37282250
Alignment:
Q  10 ttttagttat-cacatgctaaaatactcctaaaaaataagtg 50  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  37282209 ttttagttattcacttgctaaaatactcctaaaaaataagtg 37282250  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 7683613 - 7683584
Alignment:
Q  18 atcacatgctaaaatactcctaaaaaataa 47  Q
    ||||||||||||||||||||||||||||||    
T  7683613 atcacatgctaaaatactcctaaaaaataa 7683584  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 1297745 - 1297704
Alignment:
Q  10 ttttagttat-cacatgctaaaatactcctaaaaaataagtg 50  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  1297745 ttttagttattcacttgctaaaatactcctaaaaaataagtg 1297704  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 66098 - 66066
Alignment:
Q  26 ctaaaatactcctaaaaaataagtgtgtgaatt 58  Q
    |||||||||||||||||||||| ||||||||||    
T  66098 ctaaaatactcctaaaaaataattgtgtgaatt 66066  T

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Target: chr1 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 2615442 - 2615481
Alignment:
Q  10 ttttagttatcacatgctaaaatactcctaaaaaataagt 49  Q
    ||||| |||| || ||||||||||||||||||||||||||    
T  2615442 ttttaattattacttgctaaaatactcctaaaaaataagt 2615481  T

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