View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-32-LTR4-TNT-insertion-9 (Length: 358)
Name: Tnk88-32-LTR4-TNT-insertion-9
Description: Tnk88-32-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-32-LTR4-TNT-insertion-9 |
 | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
| [»] scaffold0620 (1 HSPs) |
| | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0572 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 6564 - 6221
Alignment:
| Q |
8 |
aagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6564 |
aagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
6465 |
T |
|
| Q |
108 |
ttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggtcggttaatgtgacatctttggtg |
207 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6464 |
ttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtg |
6365 |
T |
|
| Q |
208 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6364 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttt |
6265 |
T |
|
| Q |
308 |
tggcttgttatagtgtcttctcctacacactggggtcaattggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6264 |
tggcttgttatagtgtcttctcctacacattggggtcaattggt |
6221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 20970714 - 20970371
Alignment:
| Q |
8 |
aagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20970714 |
aagaattgtatatattataagtggtgttttattgtgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttctttgttagt |
20970615 |
T |
|
| Q |
108 |
ttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggtcggttaatgtgacatctttggtg |
207 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20970614 |
ttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtg |
20970515 |
T |
|
| Q |
208 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20970514 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttt |
20970415 |
T |
|
| Q |
308 |
tggcttgttatagtgtcttctcctacacactggggtcaattggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20970414 |
tggcttgttatagtgtcttctcctacacattggggtcaattggt |
20970371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 34105391 - 34105505
Alignment:
| Q |
214 |
gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttttggctt |
313 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| ||||| ||||||||| |||| |||||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
34105391 |
gagttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa-attttggctt |
34105489 |
T |
|
| Q |
314 |
gttatagtgtcttctc |
329 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
34105490 |
gttatggtgtgttctc |
34105505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 34090319 - 34090469
Alignment:
| Q |
194 |
tgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct--agagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtt |
291 |
Q |
| |
|
|||| ||| |||||| ||| ||||||| ||||| || |||||||| ||| | ||||||||||| | |||||| |||| |||||| || |||||||| |
|
|
| T |
34090319 |
tgacttctgtggtggaccgagagttgaagggtgcctcagtgatttttttttttagagtctggtgggtcgatcaattttgattcgagatcgggagtcagtt |
34090418 |
T |
|
| Q |
292 |
tcttgactcaagtttttggcttgttatagtgtcttctcctacacactgggg |
342 |
Q |
| |
|
||| ||||||| ||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
34090419 |
tctagactcaaatttttgggttgttatggtgtcttctccgacacgctgggg |
34090469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 31028 - 31345
Alignment:
| Q |
8 |
aagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31028 |
aagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
31127 |
T |
|
| Q |
108 |
ttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggtcggttaatgtgacatctttggtg |
207 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31128 |
ttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtg |
31227 |
T |
|
| Q |
208 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31228 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttt |
31327 |
T |
|
| Q |
308 |
tggcttgttatagtgtct |
325 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31328 |
tggcttgttatagtgtct |
31345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 41403307 - 41403016
Alignment:
| Q |
8 |
aagaattgtatatattataagttgtgttttattgtgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403307 |
aagaattgtatatattataagtggtgttttattgcgcccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagt |
41403208 |
T |
|
| Q |
108 |
ttaaatgaacaaatggaaattatgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggtcggttaatgtgacatctttggtg |
207 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41403207 |
ttaaattaacaaatggaaattctgggttctttgtttatatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtg |
41403108 |
T |
|
| Q |
208 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgact |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41403107 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact |
41403016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 15841021 - 15840921
Alignment:
| Q |
208 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||| || |||||| |||| |||||| || |||||||||||||| ||||||||| |
|
|
| T |
15841021 |
gtccgggagatgaggggttccttagggatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtttt |
15840922 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
15840921 |
t |
15840921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 33034717 - 33034631
Alignment:
| Q |
246 |
gagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttc-ttgactcaagttttt-ggcttgttatagtgtcttctcc |
330 |
Q |
| |
|
|||||||||| | ||||||| | || |||||| |||||||||||||| |||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
33034717 |
gagtctggtgggtcgatcacttctgattcgagatcgaaagtcagtttctttgacttaagtttttgggtttgttatggtgtcttctcc |
33034631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 36132837 - 36132719
Alignment:
| Q |
212 |
gggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttttgg- |
310 |
Q |
| |
|
||||||| ||||||| |||||||| || ||| | |||| ||||| | ||||| | |||| || ||| || ||||||||||||||| |||||| ||||| |
|
|
| T |
36132837 |
gggagttaaggggtgtcttagtgaattatttttggagtttggtgggtcgatcgcttttgatttgagatcggaagtcagtttcttgattcaagtctttgga |
36132738 |
T |
|
| Q |
311 |
cttgttatagtgtcttctc |
329 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
36132737 |
cttgttatggtgtgttctc |
36132719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 3788 - 3936
Alignment:
| Q |
194 |
tgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttc |
293 |
Q |
| |
|
|||| ||| |||||| ||| ||||||| |||| || |||||||||||| |||||||||||| |||||||| |||| |||||| || |||||||||| |
|
|
| T |
3788 |
tgacttctgtggtggaccgagagttgaacggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttc |
3887 |
T |
|
| Q |
294 |
ttgactcaagtttttggcttgttatagtgtcttctcctacacactgggg |
342 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
3888 |
ttgactcaaatttttgggttgttatggtgtcttctccgacacgctgggg |
3936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 2165460 - 2165597
Alignment:
| Q |
188 |
ttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtc |
287 |
Q |
| |
|
||||| |||| ||| |||||||| | |||||||| | || ||| |||||||||||||||||| ||||| ||||||| | |||| || ||| || |||| |
|
|
| T |
2165460 |
ttaatatgacttctctggtggtctgagagttgagtgatgccttggtgatttgtttctagagtttggtg-gccgatcgcttttgatttgagatcgggagtc |
2165558 |
T |
|
| Q |
288 |
agtttcttgactcaag-tttttggcttgttatagtgtct |
325 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
2165559 |
agtttcttgactcaagcttttttgcttgttatattgtct |
2165597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 2792334 - 2792283
Alignment:
| Q |
257 |
gccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt |
308 |
Q |
| |
|
||||||||| |||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
2792334 |
gccgatcacttttgattcgagatcggaagtcagtttcttgactcaagttttt |
2792283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 39041363 - 39041281
Alignment:
| Q |
228 |
cttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttttgg |
310 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||| |||| |||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
39041363 |
cttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttgttgg |
39041281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 26474830 - 26474903
Alignment:
| Q |
230 |
tagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaag |
303 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||| |||| |||||| ||| ||| ||||||||| |||||| |
|
|
| T |
26474830 |
tagtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagttagtttcttgtctcaag |
26474903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 37830980 - 37831075
Alignment:
| Q |
213 |
ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt |
308 |
Q |
| |
|
||||||||||| | | |||||||||||||||| |||| ||| |||||||||| |||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
37830980 |
ggagttgagggacgccctagtgatttgtttctaaagtcaggtaagccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagttttt |
37831075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 8520377 - 8520474
Alignment:
| Q |
211 |
cgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt |
308 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||| || || ||||| |||| |||||| | ||||| | ||||||||| |||||||| |
|
|
| T |
8520377 |
cgggagctgaggggtgccttagtgatttgtttctagagtctgatggaccaatcacttttgattcgagatcagaagtctgcttcttgactaaagttttt |
8520474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 34143155 - 34143060
Alignment:
| Q |
215 |
agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttttgg |
310 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||||||||||||||||||| |||| ||| || || |||||||||| | ||||||||| |||| |
|
|
| T |
34143155 |
agttgaggggtgttttagtgatttttttttggagtctggtgagccgatcacttttgcttctagatcggaagtcagtttttaaactcaagttgttgg |
34143060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 19948047 - 19948010
Alignment:
| Q |
215 |
agttgaggggtgacttagtgatttgtttctagagtctg |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19948047 |
agttgaggggtgccttagtgatttgtttctggagtctg |
19948010 |
T |
|
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 12883566 - 12883684
Alignment:
| Q |
212 |
gggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt-gg |
310 |
Q |
| |
|
||||||||||||||| |||| | |||||||| | |||||||||| |||||| | |||| |||||| ||||||||||| || ||||| |||||||| || |
|
|
| T |
12883566 |
gggagttgaggggtgccttaataatttgtttatggagtctggtggaccgatcgc-tttgattcgagatcgaaagtcagtgtcgtgacttaagtttttggg |
12883664 |
T |
|
| Q |
311 |
cttgttatagtgtcttctcc |
330 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
12883665 |
tttgttatggtgtcatctcc |
12883684 |
T |
|
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 28765703 - 28765600
Alignment:
| Q |
216 |
gttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt-ggcttg |
314 |
Q |
| |
|
||||||||||| | || |||||| |||||||| ||||||| |||||| |||| |||||| ||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
28765703 |
gttgaggggtgccctaatgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcagtttcttgacttaagtttttgggcttg |
28765604 |
T |
|
| Q |
315 |
ttat |
318 |
Q |
| |
|
|||| |
|
|
| T |
28765603 |
ttat |
28765600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 21322239 - 21322199
Alignment:
| Q |
291 |
ttcttgactcaagttttt-ggcttgttatagtgtcttctcc |
330 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
21322239 |
ttcttgactcaagtttttgggcttgttatggtgtcttctcc |
21322199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 19295942 - 19295851
Alignment:
| Q |
240 |
tttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagttttt-ggcttgttatagtgtcttctcc |
330 |
Q |
| |
|
||||| |||||||||| ||| ||||| |||| ||||| || |||| ||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
19295942 |
tttcttgagtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagtttttgggcttgttttggtgtcttctcc |
19295851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 30127259 - 30127359
Alignment:
| Q |
233 |
tgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtt-tcttgactcaagttttt--ggcttgttatagtgtcttctc |
329 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||| |||||| || |||||||| ||||||||||||||||| |||||||| | || ||||||| |
|
|
| T |
30127259 |
tgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttttttaggcttgttttggtctcttctc |
30127358 |
T |
|
| Q |
330 |
c |
330 |
Q |
| |
|
| |
|
|
| T |
30127359 |
c |
30127359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 24099424 - 24099368
Alignment:
| Q |
220 |
aggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgtttcga |
276 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| ||||||||| |||| ||||| |
|
|
| T |
24099424 |
aggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcga |
24099368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 2782172 - 2782116
Alignment:
| Q |
214 |
gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttg |
270 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||||||||||| | ||||||| |||| |
|
|
| T |
2782172 |
gagttgaggggtgccttaatgatttgtgtcgagagtctggtgggacgatcacttttg |
2782116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 10451 - 10388
Alignment:
| Q |
267 |
tttgtttcgaggacgaaagtcagtttcttgactcaagtt-tttggcttgttatagtgtcttctc |
329 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
10451 |
tttgattcgagatcgagagtcagtttcttgactcaagttgtttggcttgttttggtgtcttctc |
10388 |
T |
|
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 16829020 - 16828946
Alignment:
| Q |
233 |
tgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||| | ||| |||||||| || |||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16829020 |
tgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtttt |
16828946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 16954650 - 16954724
Alignment:
| Q |
233 |
tgatttgtttctagagtctggtgagccgatcacatttgtttcgaggacgaaagtcagtttcttgactcaagtttt |
307 |
Q |
| |
|
||||||| | ||| |||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16954650 |
tgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtttt |
16954724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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