View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-35-LTR4-TNT-insertion-1 (Length: 291)

Name: Tnk88-35-LTR4-TNT-insertion-1
Description: Tnk88-35-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-35-LTR4-TNT-insertion-1
Tnk88-35-LTR4-TNT-insertion-1
[»] chr3 (23 HSPs)
chr3 (8-279)||(30159246-30159517)
chr3 (8-279)||(9157007-9157278)
chr3 (31-279)||(11635637-11635879)
chr3 (9-279)||(22994824-22995091)
chr3 (9-279)||(10961924-10962200)
chr3 (9-279)||(10965433-10965709)
chr3 (25-271)||(19302603-19302850)
chr3 (132-279)||(10883639-10883786)
chr3 (132-279)||(55032868-55033015)
chr3 (132-279)||(24127688-24127834)
chr3 (137-279)||(7832417-7832560)
chr3 (132-279)||(13558558-13558704)
chr3 (106-279)||(15196427-15196601)
chr3 (132-276)||(36533932-36534077)
chr3 (132-279)||(2777638-2777785)
chr3 (42-279)||(18541344-18541582)
chr3 (132-276)||(47053584-47053728)
chr3 (131-279)||(28329520-28329667)
chr3 (130-234)||(12541300-12541405)
chr3 (132-191)||(22026383-22026442)
chr3 (200-279)||(3839481-3839560)
chr3 (197-241)||(17140628-17140672)
chr3 (168-240)||(20290022-20290093)
[»] chr5 (11 HSPs)
chr5 (8-279)||(30763476-30763748)
chr5 (8-279)||(26550303-26550576)
chr5 (8-279)||(28563554-28563827)
chr5 (8-279)||(2455489-2455759)
chr5 (11-279)||(19688256-19688523)
chr5 (132-279)||(22938285-22938432)
chr5 (140-279)||(34134105-34134245)
chr5 (130-279)||(2837922-2838072)
chr5 (11-87)||(35382070-35382145)
chr5 (195-241)||(34489295-34489341)
chr5 (195-241)||(24262487-24262533)
[»] chr4 (13 HSPs)
chr4 (9-279)||(26061042-26061312)
chr4 (11-279)||(53894970-53895236)
chr4 (25-279)||(15162912-15163167)
chr4 (130-279)||(3799026-3799175)
chr4 (132-279)||(27678196-27678343)
chr4 (132-279)||(56197652-56197799)
chr4 (130-279)||(19861517-19861667)
chr4 (132-279)||(39500506-39500654)
chr4 (130-279)||(33411192-33411342)
chr4 (141-279)||(49637728-49637865)
chr4 (159-279)||(15430996-15431116)
chr4 (159-279)||(15437610-15437730)
chr4 (229-279)||(19826421-19826471)
[»] scaffold0134 (1 HSPs)
scaffold0134 (7-279)||(9209-9480)
[»] scaffold0014 (1 HSPs)
scaffold0014 (8-279)||(225966-226235)
[»] chr8 (14 HSPs)
chr8 (8-279)||(31983608-31983877)
chr8 (11-279)||(22223561-22223828)
chr8 (11-279)||(22229903-22230170)
chr8 (130-279)||(38249590-38249739)
chr8 (132-279)||(8910484-8910631)
chr8 (137-279)||(17929857-17930000)
chr8 (132-276)||(23645900-23646044)
chr8 (140-279)||(12585103-12585242)
chr8 (140-279)||(23945048-23945187)
chr8 (132-279)||(22175121-22175268)
chr8 (132-279)||(33878468-33878614)
chr8 (132-279)||(25592730-25592877)
chr8 (193-241)||(13833190-13833238)
chr8 (193-241)||(17970941-17970989)
[»] chr2 (9 HSPs)
chr2 (8-279)||(11058525-11058798)
chr2 (132-279)||(1504547-1504694)
chr2 (132-279)||(45455923-45456070)
chr2 (132-279)||(25872826-25872973)
chr2 (132-279)||(13973043-13973190)
chr2 (132-279)||(31428667-31428814)
chr2 (130-279)||(24237174-24237324)
chr2 (132-275)||(9186577-9186719)
chr2 (130-277)||(25957595-25957745)
[»] chr6 (13 HSPs)
chr6 (17-279)||(32111747-32112009)
chr6 (13-279)||(21633056-21633320)
chr6 (25-279)||(11126836-11127090)
chr6 (141-279)||(12745581-12745719)
chr6 (130-279)||(24409148-24409297)
chr6 (132-279)||(23380044-23380191)
chr6 (130-279)||(25456227-25456377)
chr6 (132-276)||(22300890-22301034)
chr6 (141-279)||(14968413-14968552)
chr6 (130-279)||(12981416-12981566)
chr6 (158-279)||(28108897-28109023)
chr6 (230-279)||(7836889-7836938)
chr6 (141-188)||(7836819-7836866)
[»] chr7 (8 HSPs)
chr7 (20-279)||(13810636-13810894)
chr7 (12-184)||(16222732-16222904)
chr7 (132-279)||(45288368-45288515)
chr7 (128-279)||(9274266-9274417)
chr7 (132-279)||(4544555-4544701)
chr7 (141-279)||(20595529-20595668)
chr7 (131-279)||(22256077-22256225)
chr7 (25-84)||(9274462-9274520)
[»] chr1 (5 HSPs)
chr1 (24-279)||(49718337-49718594)
chr1 (132-279)||(21019596-21019743)
chr1 (140-279)||(45940252-45940391)
chr1 (132-276)||(13640243-13640387)
chr1 (142-279)||(22454547-22454685)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-279)||(99419-99686)
[»] scaffold0321 (1 HSPs)
scaffold0321 (132-279)||(4078-4225)
[»] scaffold0083 (1 HSPs)
scaffold0083 (25-279)||(27967-28220)
[»] scaffold0214 (2 HSPs)
scaffold0214 (131-279)||(12307-12454)
scaffold0214 (131-279)||(26323-26470)
[»] scaffold0126 (1 HSPs)
scaffold0126 (139-279)||(803-943)
[»] scaffold0048 (3 HSPs)
scaffold0048 (140-279)||(27901-28041)
scaffold0048 (214-279)||(23739-23805)
scaffold0048 (130-186)||(23686-23741)
[»] scaffold0270 (1 HSPs)
scaffold0270 (132-279)||(1294-1441)
[»] scaffold0084 (1 HSPs)
scaffold0084 (130-279)||(28202-28349)
[»] scaffold0034 (1 HSPs)
scaffold0034 (141-279)||(49551-49689)
[»] scaffold0037 (1 HSPs)
scaffold0037 (131-239)||(96182-96290)
[»] scaffold1785 (1 HSPs)
scaffold1785 (131-239)||(468-575)
[»] scaffold0035 (1 HSPs)
scaffold0035 (131-239)||(63078-63185)
[»] scaffold0049 (1 HSPs)
scaffold0049 (171-240)||(39955-40024)
[»] scaffold0718 (1 HSPs)
scaffold0718 (193-240)||(1791-1839)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 30159517 - 30159246
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  30159517 caagggacaaacaatgaaaaatctgagtaattttaaacccgattgtcctaaaaagttacaaatattctctagtacctttacaaattgttatttcaagggg 30159418  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30159417 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatctcaccttaacctaaac 30159318  T
Q  208 cccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30159317 ctcgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 30159246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 9157007 - 9157278
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| |||| ||| ||||||||      
T  9157007 caagggacaaacaaagaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaatggttgtttcaaggtt 9157106  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaac 207  Q
    |||||| || ||||||||  | |||||||||  |||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||| |    
T  9157107 tgaatgtgggattgaatctttgctttaatttatgtaggagtgcctaactcaaattttgtgtagcctacttatccaaatattatcccgcctttacctaagc 9157206  T
Q  208 cccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  9157207 cccgttataacccttaaagacatcaaagtgtgtaatgacattgattttgattgacatttagaaatttttcaa 9157278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 279
Target Start/End: Original strand, 11635637 - 11635879
Alignment:
Q  31 tgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaatgaggaattgaatccattc 130  Q
    ||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||||||      
T  11635637 tgagtaactttaaactcgattgtcccaactagttacaaatattctctagtacctttacaaattgttgtttcaaggggtgaatgagggattgaatccatga 11635736  T
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    |||||||||||||||| |||||||||||||||||||| |      ||||||||||| |||| || ||| |||||| || ||||||||| || ||| ||||    
T  11635737 tttaatttccgtaggagtgcctaactcaaattttgtgta------ttatccaaataatatcccatctttacctaagcctcgttataactcttaaatacct 11635830  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11635831 caaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 11635879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 22995091 - 22994824
Alignment:
Q  9 aagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggt 108  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| |||| ||||||||||| | |||| ||| |||||| ||||    
T  22995091 aagggacaagcaatgaaaaatctgagtaacttcaaactcgattgtcccaacaagttacaagtattctctagtaccttaaaaaat-gttgtttcaaagggt 22994993  T
Q  109 gaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacc 208  Q
    |||||||| | |||   |  | ||| |  ||||||||| |||| | ||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||    
T  22994992 gaatgagggaatgat--ctgtgtttcaaatccgtaggagtgccgacctcaaattttgtgtagcctacttatccaaatattatcccacctttacctaagcc 22994895  T
Q  209 ccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||    
T  22994894 ccgttataaccctaaaagacctcaaagtgtgtaatgacattggttttgattggcatttagaaacttttcaa 22994824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 10961924 - 10962200
Alignment:
Q  9 aagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataa--attgttatttcaaggg 106  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||| | ||||||||| ||  ||  |||||| || |||  |    
T  10961924 aagggacaaacattgaaaaatctgagtaattccaaactcgattgtcccaataagttacaaataatctctagtacccttgcaagaattgttgttccaaaag 10962023  T
Q  107 gtgaatgaggaattgaatccattct----ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacc 202  Q
    ||||||||   || || |  ||| |    |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||    
T  10962024 gtgaatgaatgatggattgaattttgtgcttaacttccgtatgaatgcctaactcaaattttgtgtagcctacttatccaaatattattccaccttcacc 10962123  T
Q  203 taaaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||| ||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10962124 taagccccgttataatcctttaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 10962200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 10965433 - 10965709
Alignment:
Q  9 aagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataa--attgttatttcaaggg 106  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||| | ||||||||| ||  ||  |||||| || |||  |    
T  10965433 aagggacaaacattgaaaaatctgagtaattccaaactcgattgtcccaataagttacaaataatctctagtacccttgcaagaattgttgttccaaaag 10965532  T
Q  107 gtgaatgaggaattgaatccattct----ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacc 202  Q
    ||||||||   || || |  ||| |    |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||    
T  10965533 gtgaatgaatgatggattgaattttgtgcttaacttccgtatgaatgcctaactcaaattttgtgtagcctacttatccaaatattattccaccttcacc 10965632  T
Q  203 taaaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||| ||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10965633 taagccccgttataatcctttaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 10965709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 19302850 - 19302603
Alignment:
Q  25 aaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttattt--caaggggtgaatgaggaattga 122  Q
    |||||| |||||| |||||||||||||||||||| | ||||||| |||| ||||||||||||| || || | || |  ||| ||| ||| |||| |||||    
T  19302850 aaaatccgagtaactttaaactcgattgtcccaaca-gttacaagtattctctagtacctttacaagttttgatgttccaaagggggaa-gagggattga 19302753  T
Q  123 atccatt-ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccct 221  Q
    ||    | |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||| ||||||||||||| |    
T  19302752 attttgtgctttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttattcaaatattatcccaccttcacctaagccccgttataacctt 19302653  T
Q  222 gaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaa 271  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  19302652 gaaagacctcaaagtgtgtagtgatattgactttgattgacgtttagaaa 19302603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 10883639 - 10883786
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||| |||||||||||||||  ||||||||    
T  10883639 ttaaattccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccatcttcacctaagccccgttataaccctttaagacctc 10883738  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  10883739 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 10883786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 55033015 - 55032868
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  55033015 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatcgaaatattatcccaccttcacctaagccccgttataaccctttaagacctc 55032916  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  55032915 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 55032868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 24127688 - 24127834
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||| ||||||||||||||| |||||||||    
T  24127688 ttaacttctgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatat-atcccaccttcacctaagccccgttataacccttaaagacctc 24127786  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  24127787 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 24127834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 7832417 - 7832560
Alignment:
Q  137 ttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaag 235  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||||||    
T  7832417 ttccgtaggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatcccacctttacctaagccccgttataaccctttaagacctcaaag 7832516  T
Q  236 tgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||| | ||| |||||||||||||||||||||||||||||||||    
T  7832517 tgtgcattgacattgattttgattgacgtttagaaacttttcaa 7832560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 13558558 - 13558704
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||| ||||||||||||||| |||||||||    
T  13558558 ttaacttctgtaggaatgtctaactcaaattttgtgtagcctacttatccaaatat-atcccaccttcacctaagccccgttataacccttaaagacctc 13558656  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  13558657 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 13558704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 106 - 279
Target Start/End: Complemental strand, 15196601 - 15196427
Alignment:
Q  106 ggtgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaaccta 204  Q
    ||||||||| | |||||||  ||  ||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||    
T  15196601 ggtgaatgatggattgaatttatgttttaacttccgtaggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcaccta 15196502  T
Q  205 aaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||||||||||||| | |||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  15196501 agccccgttataaccattaaagacatcaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 15196427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 132 - 276
Target Start/End: Complemental strand, 36534077 - 36533932
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    |||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||| |||||| |||||||||||||||  |||||||    
T  36534077 ttaacttccgtaggaatgcctaactcaaaattttgtgtagcctgcttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacct 36533978  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaactttt 276  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||    
T  36533977 caaagtgtgcattgacattgattttgattgacgtttagaaactttt 36533932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 2777638 - 2777785
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||||| ||||||  |||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||| ||    
T  2777638 ttaacttccgtaggagtgcctacttcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacatc 2777737  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  2777738 aaagtgtgcattgacattgattttgattgacgtctagaaacttttcaa 2777785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 18541344 - 18541582
Alignment:
Q  42 aaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaatgagga-attgaatccattctttaatttcc 140  Q
    ||||||||||||||||| || |||||||| || |||||||||||||||||||||| ||||||||| |||||||||  ||||||||  |  || || || |    
T  18541344 aaactcgattgtcccaataaattacaaatgttctctagtacctttataaattgttgtttcaaggg-tgaatgaggggattgaatctgtgtttaaaatttc 18541442  T
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataa-ccctgaaagacctcaaagtgtg 239  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||| || ||| |||||| |||| |||||| |||  |||||||| |||||||     
T  18541443 gtaggagtgcataacttaaattttgtgcagccaacttatccaaatattatcccagctttacctaagccccattataaccccaaaaagaccttaaagtgtc 18541542  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||| || || ||||||| || |||||||| |||||||    
T  18541543 taatgacatggactttgattaacatttagaaaattttcaa 18541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 276
Target Start/End: Original strand, 47053584 - 47053728
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||  |||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  47053584 ttaacttccgtatcaatgcctaactcaaattttgtgtagcctacttattcaaatattatcccaccttcacctaagccccgttataaccctttaagacctc 47053683  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaactttt 276  Q
    |||||||| | | | |||||||||||||||||||||| |||||||    
T  47053684 aaagtgtgcattaacattgattttgattgacgtttagcaactttt 47053728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 28329520 - 28329667
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||| || ||| |||||| |||| ||||||||||  |||||||    
T  28329520 tttaacttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaata-tatcccaacttcacctaagccccattataaccctttaagacct 28329618  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||| ||||| | ||| ||||||||||||||| |||||||||||||||||    
T  28329619 caaggtgtgcattgacattgattttgattgatgtttagaaacttttcaa 28329667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 12541405 - 12541300
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaat-attatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| || ||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||||| |||||| ||||||||||||||| ||||||    
T  12541405 ctttaactttcgtaggagtgcctaactcaaattttgtgtagcctacttatccaaataaatatcccaccttcacctaagccccgttataacccttaaagac 12541306  T
Q  229 ctcaaa 234  Q
    ||||||    
T  12541305 ctcaaa 12541300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 22026383 - 22026442
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatc 191  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22026383 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatc 22026442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 3839481 - 3839560
Alignment:
Q  200 acctaaaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||| | |||||||||| ||  |||||||||||||||  | ||| |||||||||||||||||||||||||||||||||    
T  3839481 acctaagctccgttataactctttaagacctcaaagtgttcattgacattgattttgattgacgtttagaaacttttcaa 3839560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 17140672 - 17140628
Alignment:
Q  197 ttaacctaaaccccgttataaccctgaaagacctcaaagtgtgta 241  Q
    ||||||||  || ||||||||||||||||||||||||||||||||    
T  17140672 ttaacctaggccacgttataaccctgaaagacctcaaagtgtgta 17140628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 20290022 - 20290093
Alignment:
Q  168 cagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgt 240  Q
    ||||||||||  |||||||| |||||| |||||||||| ||  ||||||| | |||||||||||||| |||||    
T  20290022 cagcctactttcccaaatat-atctcatcttaacctaagccatgttataatcttgaaagacctcaaaatgtgt 20290093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 30763476 - 30763748
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |    
T  30763476 caagggacaaacaatgaaaaatttgagtaattttaaactcgattgtcccaacaagttacaaatattctctagtacctttataaattgttatttcaaggtg 30763575  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatatt-atctcaccttaacctaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  30763576 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattaatctcacctttacctaaa 30763675  T
Q  207 ccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30763676 ccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 30763748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 26550303 - 26550576
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||||| || |||||||||||| | ||||||||||||| |||||||||||||||||||    
T  26550303 caagggacaaacaaagaaaaatttgagtaactttaaactcgattgtcctaacaagttacaaataatctctagtacctttacaaattgttatttcaagggg 26550402  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaa-tgcctaactc-aaattttgtgcagcctacttatccaaatattatctcaccttaacctaa 205  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  26550403 tgaatgagggattgaatccattctttaacttccgtaggaattgcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcacctaa 26550502  T
Q  206 accccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     ||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  26550503 gccccgttataacccttaaagacctcaaagtgtgcattgatattgatttttattgacgtttagaaatttttcaa 26550576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 28563827 - 28563554
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||    
T  28563827 caagggacaaacaaagaaaaatttgagtaactttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaattgttatttcaagggg 28563728  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaa-tgcctaactc-aaattttgtgcagcctacttatccaaatattatctcaccttaacctaa 205  Q
    ||||||||  |||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  28563727 tgaatgagtgattgaatccattctttaacttccgtaggaattgcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcacctaa 28563628  T
Q  206 accccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     ||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  28563627 gccccgttataacccttaaagacctcaaagtgtgcattgatattgatttttattgacgtttagaaatttttcaa 28563554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2455489 - 2455759
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||| ||||||||||    
T  2455489 caagggacaaacaataaaaaatcttggtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaa-ttgttgtttcaagggg 2455587  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaac 207  Q
    ||||||||| ||||||||||| ||||||||| |||| || |||||||||||||||||||| |||||| ||||||||||| |||| |||||| |||||| |    
T  2455588 tgaatgagggattgaatccatgctttaattttcgtatgagtgcctaactcaaattttgtgtagcctatttatccaaataatatcacacctttacctaagc 2455687  T
Q  208 cccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2455688 tccgttataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 2455759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 19688256 - 19688523
Alignment:
Q  11 gggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtga 110  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||   |||||||| |||| |||||||| |||||||| ||||    
T  19688256 gggacaaacaaagaaaaatctgagtaactttaaactcgattgtcctaaaa-gttacaaataagctctagtacttttacaaattgttgtttcaaggtgtga 19688354  T
Q  111 atgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacccc 210  Q
    ||| || ||||||||  | ||||||||||  ||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||| ||||    
T  19688355 atgtgggattgaatctttgctttaatttctataggagtgcctaactcaaattttgtgtagcttacttatccaaatattatcccacctttacctaagcccc 19688454  T
Q  211 gttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19688455 gttataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaatttttcaa 19688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 22938432 - 22938285
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||| |||||| ||  ||||||||    
T  22938432 ttaacttccgtagggatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgctataactctttaagacctc 22938333  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  22938332 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 22938285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 34134245 - 34134105
Alignment:
Q  140 cgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  34134245 cgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataacccttaaagacctcaaagtgtg 34134146  T
Q  240 taatga-tattgattttgattgacgtttagaaacttttcaa 279  Q
     | |||  | |||||||||||||||||||||||| ||||||    
T  34134145 cattgacaaatgattttgattgacgtttagaaacctttcaa 34134105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 2838072 - 2837922
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| |||||||||| ||| ||||||||| ||||||| |||||||||| | |||||||||| |||||| |||||| ||||||||||||||| |||||     
T  2838072 ctttaacttccgtaggagtgcataactcaaaattttgtgtagcctacttaacaaaatattatcccaccttcacctaagccccgttataacccttaaagat 2837973  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||   | ||| ||||||||||||||||||||| ||| |||||||    
T  2837972 ctcaaagtggacattgacattgattttgattgacgtttataaatttttcaa 2837922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 35382145 - 35382070
Alignment:
Q  11 gggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtaccttta 87  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| ||  |||||||||| | |||||||||||||    
T  35382145 gggacaaacaatgaaaaatttgagtaatttcaaactcgattgtccc-aattgttacaaataatctctagtaccttta 35382070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 34489341 - 34489295
Alignment:
Q  195 ccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgta 241  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  34489341 ccttaacctaaaccacgttataaccctgaaagacctcaaaatgtgta 34489295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 24262533 - 24262487
Alignment:
Q  195 ccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgta 241  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||    
T  24262533 ccttaacctaaaccacattataaccctgaaatacctcaaagtgtgta 24262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 26061312 - 26061042
Alignment:
Q  9 aagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggt 108  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||| ||||||||| |    
T  26061312 aagggacgaacaatgaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacatattgttgtttcaagggat 26061213  T
Q  109 gaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacc 208  Q
    |||||||  ||||||||||| ||||||||||  ||||| ||||||||||||||||| || || ||||||||||||||| |||| |||||| |||||| ||    
T  26061212 gaatgagtgattgaatccatgctttaatttcaataggagtgcctaactcaaattttatgtagtctacttatccaaataatatcacacctttacctaagcc 26061113  T
Q  209 ccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26061112 ccgttataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 26061042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 53894970 - 53895236
Alignment:
Q  11 gggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtga 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||| | ||||||||||||| || ||||| |||||| |||||     
T  53894970 gggacaaacaatgaaaaatctgagtaatttcaaactcgattgtcccgata-gttacaaataatctctagtacctttacaa-ttgttgtttcaaagggtgg 53895067  T
Q  111 atgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacccc 210  Q
    |||||| ||| ||||  | ||||||||| ||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  53895068 atgagggatttaatctttgctttaattttcgtaggagttccttactcaaattttgtgtagcctacttatccaaatattatctcacctttacctaagcccc 53895167  T
Q  211 gttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  53895168 gttataaccctgaaagacctcaaagtgtgtaatgacattgattttgattaacgtttagaaactcttcaa 53895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 15162912 - 15163167
Alignment:
Q  25 aaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataa--attgttatttcaaggggtgaatgaggaattga 122  Q
    |||||| |||||| || |||||||||||||||||   ||||||| |||||||||||||||| | ||  |||||| || ||| || ||||||| | |||||    
T  15162912 aaaatccgagtaacttcaaactcgattgtcccaatt-gttacaagtattatctagtaccttcacaataattgttgttccaaagg-tgaatgatggattga 15163009  T
Q  123 atccatt-ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccct 221  Q
    ||    | |||| | ||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  15163010 attttgtgctttcacttccgtatgagtgcttaactcaaattttgtgtagcctacttatccaaatattatctcaccttcgcctaagcccagttataaccct 15163109  T
Q  222 gaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15163110 gaaagtcctcaaagtgtgaaatgacattgattttgattgacgtttagaaacttttcaa 15163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 3799175 - 3799026
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacc 229  Q
    |||||| |||||||||| |||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||  |||||||||||||| |||||||    
T  3799175 ctttaacttccgtaggagtgcctaactcaaattttgtgtaccctacttatccaaataatatctcaccttcacctaagtcccgttataacccttaaagacc 3799076  T
Q  230 tcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  3799075 tcaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 3799026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 27678343 - 27678196
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||| |||| |||||||||| |||||||||    
T  27678343 ttaacttccgtaggattgcctaactcaaattttatgtagcctacttatccaaatattatttcaccttcacctaagcccccttataacccttaaagacctc 27678244  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  27678243 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 27678196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 56197652 - 56197799
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||| ||||||||||||| | |||||||||    
T  56197652 ttaacttctgtaggaatgcctaactcaaattttgtgtaacctacttatccaaatattatcccaccttcacctaagccccgttataacctttaaagacctc 56197751  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  56197752 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 56197799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 19861667 - 19861517
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    ||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||||    
T  19861667 ctttaattttcataggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataacccttaaagac 19861568  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| |||||||||||||||| |||| |||||||||||    
T  19861567 ctcaaagtgtgcattgacattgattttgattgacatttaaaaacttttcaa 19861517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 39500506 - 39500654
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatat-tatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||| |||||| ||| ||||||||||| || |||||    
T  39500506 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaataaatatcccaccttcacctaagcccagttataacccttaatgacct 39500605  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  39500606 caaagtgtgcattgacattgattttgattgaagtttagaaacttttcaa 39500654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 33411342 - 33411192
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| |||||||||| || |||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| |||| ||| |||||| ||||||    
T  33411342 ctttaacttccgtaggagtgtctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccattaaaacccttaaagac 33411243  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||||||||    
T  33411242 ctcaaagtgtgcattgacattgattttgatcgacgtttagaaacttttcaa 33411192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 49637865 - 49637728
Alignment:
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgt 240  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||| | ||||| |||||||||||||||||     
T  49637865 gtaggagtgcctaactcaaattttgtgtagcctacttatccaaatattatc-caccttcacctaagccccgttgttacccttaaagacctcaaagtgtgc 49637767  T
Q  241 aatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||| |||||||||||||||||| |||||||| |||||    
T  49637766 attgacattgattttgattgacgtatagaaactcttcaa 49637728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 15431116 - 15430996
Alignment:
Q  159 aattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgat 258  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||| |||| |||||| |||  ||||||||||| |||| | ||| ||||||||||||    
T  15431116 aattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccattataatcctttaagacctcaaaatgtgcattgacattgattttgat 15431017  T
Q  259 tgacgtttagaaacttttcaa 279  Q
    |||||||||||||||||||||    
T  15431016 tgacgtttagaaacttttcaa 15430996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 15437730 - 15437610
Alignment:
Q  159 aattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgat 258  Q
    ||||||||| ||||||||||||||||||||||| |||||| |||||| |||| |||||| |||  ||||||||||| |||| | ||| ||||||||||||    
T  15437730 aattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccattataatcctttaagacctcaaaatgtgcattgacattgattttgat 15437631  T
Q  259 tgacgtttagaaacttttcaa 279  Q
    |||||||||||||||||||||    
T  15437630 tgacgtttagaaacttttcaa 15437610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 19826421 - 19826471
Alignment:
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| ||||||||||||||||||||||||| |||||||    
T  19826421 ctcaaagtgtgcattgacattgattttgattgacgtttagaaatttttcaa 19826471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 9209 - 9480
Alignment:
Q  7 acaagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggg 106  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||| |||||| ||||||| | ||||||||||| || ||||| |||||||||    
T  9209 acaagggacaaacaatgaaaatttttagtaattttaaactcgattgtcccaacaagttataaatattctatagtacctttacaa-ttgttgtttcaaggg 9307  T
Q  107 gtgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaa 206  Q
    |||||||||| ||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||| |||| |||||| ||||||     
T  9308 gtgaatgagggattgaatccatgctttaattttcgtaggcgtgcctaactcaaattttgtgtagcctacttatccaaataatatcccacctttacctaag 9407  T
Q  207 ccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9408 ccccattataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 9480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 225966 - 226235
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||| ||||||||||    
T  225966 caagggacaaacaatgaaaaatat-agtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaa-ttgttgtttcaagggg 226063  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaac 207  Q
     |||||||| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| || ||||||||||||||| ||||  ||||| ||||||||    
T  226064 cgaatgagggattgaatccatgctttaattttcctaggagtgcctaactcaaattttgtgtagtctacttatccaaataatatcatacctttacctaaac 226163  T
Q  208 cccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  226164 cccgttataacccttaaagacctcaaaatgtgtaatgacattgattttgattgacgtttagaaacttttcaa 226235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 31983608 - 31983877
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||| ||||||||||    
T  31983608 caagggacaaacaatgaaaaatat-agtaattttaaactcgattgtcccaacaagttataaatattctctagtacctttacaa-ttgttgtttcaagggg 31983705  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaac 207  Q
     |||||||| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| || ||||||||||||||| ||||  ||||| ||||||||    
T  31983706 cgaatgagggattgaatccatgctttaattttcctaggagtgcctaactcaaattttgtgtagtctacttatccaaataatatcatacctttacctaaac 31983805  T
Q  208 cccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  31983806 cccgttataacccttaaagacctcaaaatgtgtaatgacattgattttgattgacgtttagaaacttttcaa 31983877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 22223828 - 22223561
Alignment:
Q  11 gggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtga 110  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||| | |||||||||||| ||||||| ||||    |||||| |||||| ||||||    
T  22223828 gggacaaacaatgataaatccgagtaatttcaaactcgattgtcccaata-gttacaaatattctctagtaacttttaccattgttgtttcaaagggtga 22223730  T
Q  111 atgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacccc 210  Q
    |||||| ||||||||  | ||||||||| || |||| | |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||    
T  22223729 atgagggattgaatctttgctttaattttcgaaggagtccctaactcaaattttgtgtagcctacttattcaaatattatctcacctttacctaagcccc 22223630  T
Q  211 gttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22223629 gttataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 22223561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 22230170 - 22229903
Alignment:
Q  11 gggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtga 110  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||| | |||||||||||| ||||||| ||||    |||||| |||||| ||||||    
T  22230170 gggacaaacaatgataaatccgagtaatttcaaactcgattgtcccaata-gttacaaatattctctagtaacttttaccattgttgtttcaaagggtga 22230072  T
Q  111 atgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacccc 210  Q
    |||||| ||||||||  | ||||||||| || |||| | |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||    
T  22230071 atgagggattgaatctttgctttaattttcgaaggagtccctaactcaaattttgtgtagcctacttattcaaatattatctcacctttacctaagcccc 22229972  T
Q  211 gttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22229971 gttataacccttaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagaaacttttcaa 22229903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 38249739 - 38249590
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacc 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||     
T  38249739 ctttaatttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctgaaagaca 38249640  T
Q  230 tcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  38249639 tcaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 38249590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 8910484 - 8910631
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  8910484 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcacaccttcacctaagccccgttataaccctttaagacctc 8910583  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  8910584 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 8910631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 17929857 - 17930000
Alignment:
Q  137 ttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaag 235  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||    
T  17929857 ttccgtaggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatctcaccttcacctaagccccgttataaccctttaagacctcaaag 17929956  T
Q  236 tgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||| | ||| |||||||||||||||||||||||||||||||||    
T  17929957 tgtgcattgacattgattttgattgacgtttagaaacttttcaa 17930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 132 - 276
Target Start/End: Original strand, 23645900 - 23646044
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||| |||||||| ||||||  ||||||||    
T  23645900 ttaacttccgtaggaatgcctaactcaaattttgtatagcctacttatccaaatattatcccaccttcacctaagccccgttacaaccctttaagacctc 23645999  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaactttt 276  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||    
T  23646000 aaagtgtgcattgacattgattttgattgacgtttagaaactttt 23646044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 12585103 - 12585242
Alignment:
Q  140 cgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  || |||||||||||||    
T  12585103 cgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaatacctcaaagtgtg 12585202  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     |  || |||||||||||||||||||||||||||||||||    
T  12585203 catcgacattgattttgattgacgtttagaaacttttcaa 12585242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 23945187 - 23945048
Alignment:
Q  140 cgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||  ||||||||||||||  ||||||||||||||||    
T  23945187 cgtaggaatgcctaactcaaattttgtgtaacctacttatccaaatattatcccaccttcacctaagtcccgttataaccctttaagacctcaaagtgtg 23945088  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     | ||| |||||||||||||||||||||||||||||||||    
T  23945087 cattgacattgattttgattgacgtttagaaacttttcaa 23945048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 22175268 - 22175121
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||| || |||||| |||||| |||||||||||||||  || |||||    
T  22175268 ttaacttccgtaggaatgcctaactcaaatattgtgtagcctacttatcgaaatattgtcccaccttcacctaagccccgttataaccctttaaaacctc 22175169  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  22175168 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 22175121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 33878614 - 33878468
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatat-tatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    |||| |||||||||  |||||||||||||||||||| ||||||||||||||||||  |||| |||||| |||||| ||||||||||||||| ||||||||    
T  33878614 ttaacttccgtagg--tgcctaactcaaattttgtgtagcctacttatccaaataaatatcccaccttcacctaagccccgttataacccttaaagacct 33878517  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  33878516 caaagtgtgcattgacattgattttgattgatgtttagaaacttttcaa 33878468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 25592877 - 25592730
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||| |||||| |||||| ||| |||||||||||  ||||||||    
T  25592877 ttaacttccgtatgaatgccaaactcaaattttgtgtagcctacttatccaaata-tatcccaccttcacctaagccctgttataaccctttaagacctc 25592779  T
Q  232 aaagtgtgtaatga-tattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | |||  |||||||||||||||||||||||||||||||||    
T  25592778 aaagtgtgcattgacaattgattttgattgacgtttagaaacttttcaa 25592730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 13833190 - 13833238
Alignment:
Q  193 caccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgta 241  Q
    ||||||| ||||| || ||||| ||||||||||||||||||||||||||    
T  13833190 caccttaccctaagccacgttacaaccctgaaagacctcaaagtgtgta 13833238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 17970989 - 17970941
Alignment:
Q  193 caccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgta 241  Q
    ||||||||||||| |  | |||||||||| |||||||||||||||||||    
T  17970989 caccttaacctaagctacattataaccctcaaagacctcaaagtgtgta 17970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 11058525 - 11058798
Alignment:
Q  8 caagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaagggg 107  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||     
T  11058525 caagggacaaacaaagaaaaatttgagtaaatttaaactcgattgtcccaacaagttacaaataatctctagtacctttacaaattgttatttcaaggg- 11058623  T
Q  108 tgaatgaggaattgaatccattctttaatttccgtaggaat--gcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaaccta 204  Q
    ||||||||| |||||||||||||||||| |||||||||| |  |||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||    
T  11058624 tgaatgagggattgaatccattctttaacttccgtaggagttggcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcaccta 11058723  T
Q  205 aaccccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||||||||||||||| |||||||| |||||||| | ||||||||||||| ||||||||||||||| |||||||    
T  11058724 agccccgttataacccttaaagaccttaaagtgtgcattgatattgatttttattgacgtttagaaatttttcaa 11058798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 1504694 - 1504547
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||    
T  1504694 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatctcaccttcacctaagccccgttataaccgttaaagacctc 1504595  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  1504594 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 1504547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 45455923 - 45456070
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  45455923 ttaattttcgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacctc 45456022  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  45456023 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 45456070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 25872826 - 25872973
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  25872826 ttaacttccgtatgaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacctc 25872925  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||| |||| | ||| |||||||||||||||||||||||||||||||||    
T  25872926 aaaatgtgcattgacattgattttgattgacgtttagaaacttttcaa 25872973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 13973190 - 13973043
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  13973190 ttaacttccgtatgaatgtctaactcaaattttttgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacctc 13973091  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  13973090 aaagtgtgaactgacattgattttgattgacgtttagaaacttttcaa 13973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 31428814 - 31428667
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||| ||| |||||||||||  ||||||||    
T  31428814 ttaacttccgtagaaatgcctaactcaaattttgtgtagcctacttatccaaatattattccaccttcacctaagccctgttataaccctttaagacctc 31428715  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||||    
T  31428714 aaagtgtgcattgatattgattttgattgatgtttagaaacttttcaa 31428667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 24237174 - 24237324
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatat-tatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||  |||| |||||| |||||| ||||||||||||||| ||||||    
T  24237174 ctttaactttcgtaggagtgcctaactcaaattttgtgtagcctacttatccaaataaatatcccaccttcacctaagccccgttataacccttaaagac 24237273  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  24237274 ctcaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 24237324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 9186719 - 9186577
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |||||||||    
T  9186719 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccgccttcacctaagccccgttataacccttaaagacctc 9186620  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttt 275  Q
    ||||  || | ||| |||||||||||||||||||||||||||||    
T  9186619 aaag-ctgcattgacattgattttgattgacgtttagaaacttt 9186577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 25957745 - 25957595
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatat---tatctcaccttaacctaaaccccgttataaccctgaaag 226  Q
    |||||| || ||||||| |||| ||||||||||||||| ||||||||||||||||||    |||| |||||| |||||| ||||||||||||||| ||||    
T  25957745 ctttaactttcgtaggagtgcccaactcaaattttgtgtagcctacttatccaaataaatatatcccaccttcacctaagccccgttataacccttaaag 25957646  T
Q  227 acctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttc 277  Q
    ||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  25957645 acctcaaagtgtgcattgacattgattttgattgacgtttagaaacttttc 25957595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 32111747 - 32112009
Alignment:
Q  17 aacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaatgagg 116  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||| ||||||| ||||| |||||||| |||||||||||||||||||    
T  32111747 aacaatgaaaaatatgagtaactttaaactcgattgtcccaacaagttaccaatattctctagtatctttacaaattgttgtttcaaggggtgaatgagg 32111846  T
Q  117 aattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttata 216  Q
     ||||||||||| ||||||||||||||||| || ||||||||||||||||  |||||||||||| ||||| |||| |||||| |||||| |||| |||||    
T  32111847 gattgaatccatgctttaatttccgtaggagtgtctaactcaaattttgtatagcctacttatctaaataatatcccacctttacctaagccccattata 32111946  T
Q  217 accctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  32111947 acctttaaagacctcaaagtgtgtaatgacgttgattttgattgacgtttagaaacttttcaa 32112009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 21633056 - 21633320
Alignment:
Q  13 gacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaat 112  Q
    ||||||| | |||||||||||||||||| ||||||||||||||| | | |||||||||| | ||||||||||||| || ||||| |||||| ||||||||    
T  21633056 gacaaacgaagaaaaatctgagtaatttcaaactcgattgtcccgata-gttacaaataatctctagtacctttacaa-ttgttgtttcaaagggtgaat 21633153  T
Q  113 gaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgt 212  Q
    |||| ||| ||||  | ||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||| ||| || || ||| || |||    
T  21633154 gagggatttaatctttgctttaatttccgtaggagttcctaactcaaatttcgtgtagcctacttatccaaatattatcccacatttacataagcctcgt 21633253  T
Q  213 tataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  21633254 tataacccttaaagacctcaaagtgtgtaatgacaatgattttgattgacgtttagaaacttttcaa 21633320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 11127090 - 11126836
Alignment:
Q  25 aaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataa--attgttatttcaaggggtgaatgaggaattga 122  Q
    ||||||||||||| || ||||||||||||| |||   ||||||| || | ||||||||| ||| ||  |||||| || ||| || ||||||  | |||||    
T  11127090 aaaatctgagtaacttcaaactcgattgtctcaatt-gttacaagtaatctctagtacccttacaagaattgttgttccaaagg-tgaatgttggattga 11126993  T
Q  123 atccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctg 222  Q
    ||  ||  ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||||||||||||||    
T  11126992 atttatgttttaacttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcatctaagccccgttataaccctg 11126893  T
Q  223 aaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  11126892 aaagaccacaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 11126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 12745581 - 12745719
Alignment:
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgt 240  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||||||||||     
T  12745581 gtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacctcaaagtgtgc 12745680  T
Q  241 aatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||| ||||||||||||||||||||||||| |||||||    
T  12745681 attgacattgattttgattgacgtttagaaatttttcaa 12745719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 24409148 - 24409297
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacc 229  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||| |||| |||||||||| |||||||    
T  24409148 ctttaacttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaataatatcccaccttcacctaagccccattataacccttaaagacc 24409247  T
Q  230 tcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||| | ||| || ||||||||||||||||||||||||||||||    
T  24409248 tcaaagtgtgcattgacatggattttgattgacgtttagaaacttttcaa 24409297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 23380191 - 23380044
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||  | |||||| ||||||||||||||| |||||||||    
T  23380191 ttaacttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaataatatcccacaatcacctaagccccgttataacccttaaagacctc 23380092  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  23380091 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 23380044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 25456227 - 25456377
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| |||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  |||||    
T  25456227 ctttaacttccgtaggagtgcctaactcaaaattttatgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagac 25456326  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  25456327 ctcaaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 25456377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 276
Target Start/End: Original strand, 22300890 - 22301034
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| || ||| | | ||||||||||| |||||||||    
T  22300890 ttaacttccgtaggaatgcctaactcaaattttatgtagcctacttatccaaatattatcccaccttcacataagctctgttataaccctaaaagacctc 22300989  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaactttt 276  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||    
T  22300990 aaagtgtgcattgacattgattttgattgacgtttagaaactttt 22301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 14968413 - 14968552
Alignment:
Q  141 gtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |  ||||||||||||||||    
T  14968413 gtaggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatcgcaccttcacctaagccccgttataaccatttaagacctcaaagtgtg 14968512  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     | ||| |||||||||||||||||||||||||||||||||    
T  14968513 cattgacattgattttgattgacgtttagaaacttttcaa 14968552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 12981566 - 12981416
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagac 228  Q
    |||||| || ||||||||||||||||||||| ||||||  |||||||||||| |||||||||| |||||| |||||| |||||||||||||||  |||||    
T  12981566 ctttaactttcgtaggaatgcctaactcaaaattttgtatagcctacttatcgaaatattatcccaccttcacctaagccccgttataacccttcaagac 12981467  T
Q  229 ctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  12981466 ctcaaagtgtgcattgacattgattttgattgatgtttagaaacttttcaa 12981416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 279
Target Start/End: Complemental strand, 28109023 - 28108897
Alignment:
Q  158 aaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg-----taatgatattgat 252  Q
    |||||||||| ||||||||||||||||||||||| |||||| || ||| |||| ||||||||||  ||||||||||||||||     || | | ||||||    
T  28109023 aaattttgtgtagcctacttatccaaatattatcccaccttcacttaagccccattataaccctttaagacctcaaagtgtgcattatattaacattgat 28108924  T
Q  253 tttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||||||||||||||||    
T  28108923 tttgattgacgtttagaaacttttcaa 28108897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 7836889 - 7836938
Alignment:
Q  230 tcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7836889 tcaaagtgtgtattgacattgattttgattgacgtttagaaacttttcaa 7836938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 7836819 - 7836866
Alignment:
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatatt 188  Q
    |||||| |||||||||||||||||||| |||||| |||||||||||||    
T  7836819 gtaggagtgcctaactcaaattttgtgtagcctagttatccaaatatt 7836866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 13810894 - 13810636
Alignment:
Q  20 aatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaatgaggaat 119  Q
    ||||||||||| ||||||||| |||||||||| ||| || |||||||||||||| ||||||||||||| || ||||| |||||| |||||||||||| ||    
T  13810894 aatgaaaaatcagagtaatttcaaactcgattatcctaacaagttacaaatattctctagtacctttacaa-ttgttgtttcaaagggtgaatgagggat 13810796  T
Q  120 tgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataacc 219  Q
    ||||| | | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||  | ||||||||||    
T  13810795 tgaattcgtgctttaatttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaatattatcccacctttacctaagacacgttataacc 13810696  T
Q  220 ctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13810695 ctgaaagacctcaaagtgtgtaatgacattgattttgattgacgtttagagacttttcaa 13810636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 16222732 - 16222904
Alignment:
Q  12 ggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaa 111  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  16222732 ggacaaagtatgaaaaatctgagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacaaattgttatttcaaggtgtgaa 16222831  T
Q  112 tgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaa 184  Q
    || || ||||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  16222832 tgtgggattgaatccatgctttaacttccgtaggagtgcctaactcaaattttgtgtagcctacttatccaaa 16222904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 45288515 - 45288368
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| | |||||||||||||  ||||||||    
T  45288515 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagctccgttataaccctttaagacctc 45288416  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  45288415 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 45288368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 9274417 - 9274266
Alignment:
Q  128 ttctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaaga 227  Q
    |||||||| || |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||  ||||| ||||||||||||||    
T  9274417 ttctttaactttcgtatgagtgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagacccgtgataaccctgaaaga 9274318  T
Q  228 cctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  9274317 cctcaaagtgtgtagtgatattgattttgattgatgtttagaaactcttcaa 9274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 4544555 - 4544701
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||| |||||||||||||||  ||||||||    
T  4544555 ttaacttccataggaatgcctaactcaaattttgtgtagcctatttatccaaatat-atctcaccttcacctaagccccgttataaccctttaagacctc 4544653  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  4544654 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 4544701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 20595529 - 20595668
Alignment:
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgt 240  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||  ||||||||||||||||     
T  20595529 gtaggagtgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccctttaagacctcaaagtgtgc 20595628  T
Q  241 aatga-tattgattttgattgacgtttagaaacttttcaa 279  Q
    | |||  |||||||||||||||||||||||||||||||||    
T  20595629 attgacaattgattttgattgacgtttagaaacttttcaa 20595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 22256077 - 22256225
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| || ||||||| |||||||||||||||||||| |||||||||||||||||| |||| | |  | |||||| ||||||||||||||| ||||||||    
T  22256077 tttaactttcgtaggagtgcctaactcaaattttgtgtagcctacttatccaaataatatccctcagtcacctaagccccgttataacccttaaagacct 22256176  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  22256177 caaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 22256225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 9274520 - 9274462
Alignment:
Q  25 aaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacct 84  Q
    |||||| |||||| |||||||||||||||||| || |||||||| |||| ||||||||||    
T  9274520 aaaatccgagtaactttaaactcgattgtccc-aacagttacaagtattctctagtacct 9274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 49718337 - 49718594
Alignment:
Q  24 aaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggtgaatgaggaattgaa 123  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  49718337 aaaaatcttagtaactttaaactcgattgtcccaacaagttacaaatattctctagtacctttacaaattgttgtttcaaggggtgaatgagggattgaa 49718436  T
Q  124 tccatt-ctttaatttccgtaggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccct 221  Q
    |    | |||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  49718437 ttttgtgctttaacttccgtaggagtgcctaactcaaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccct 49718536  T
Q  222 gaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
      |||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||    
T  49718537 ttaagacctcaaagtgtgcattgacattgattttgattgacgtttagaaatttttcaa 49718594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 21019743 - 21019596
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||| | |||||||||    
T  21019743 ttaacttccgtaagaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataaccattaaagacctc 21019644  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  21019643 aaagtgtacattgacattgattttgattgacgtttagaaacttttcaa 21019596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 45940252 - 45940391
Alignment:
Q  140 cgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  45940252 cgtaggaatgcctaactcaaattttgtgtagcctacttattcaaatattatcccaccttcacctaagccccgttataacccttaaagacctcaaagtgtg 45940351  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
     | ||| ||||||||||||||||||||| |||||||||||    
T  45940352 cattgacattgattttgattgacgtttaaaaacttttcaa 45940391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 276
Target Start/End: Complemental strand, 13640387 - 13640243
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| || ||| | | ||||||||||| |||||||||    
T  13640387 ttaacttccgtaggaatgcctaactcaaattttatgtagcctacttatccaaatattatcccaccttcacataagctctgttataaccctaaaagacctc 13640288  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaactttt 276  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||    
T  13640287 aaagtgtgcattgacattgattttgattgacgtttagaaactttt 13640243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 22454685 - 22454547
Alignment:
Q  142 taggaatgcctaactcaaa-ttttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtgt 240  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||| |||||| |||||| |||||||||||||||  ||||||||||||||||     
T  22454685 taggaatgcctaactcaaaattttgtgtagcctatttatccaagtattatcccaccttcacctaagccccgttataaccctttaagacctcaaagtgtgc 22454586  T
Q  241 aatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||| ||||||||||||||| |||||||||||||||||    
T  22454585 attgacattgattttgattgatgtttagaaacttttcaa 22454547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 99686 - 99419
Alignment:
Q  9 aagggacaaacaatgaaaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataaattgttatttcaaggggt 108  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||| || |||||||||| ||  | ||||| ||||||  |||    
T  99686 aagggacaaacaatgaaaaatctgagtaaattcaaactcgattgtcccaaca-gttacaaatgttctctagtacctgtacca-ttgttgtttcaaaaggt 99589  T
Q  109 gaatgaggaattgaatccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaacc 208  Q
    |||||||| ||| |||||||  ||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || |    
T  99588 gaatgagggattaaatccatgttttaatttctgtaggagtgtctaactcaaattttgtgtagcctacttatccaaatattatcccacctttacct-aagc 99490  T
Q  209 ccgttataaccctgaaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | ||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||    
T  99489 ctgttataacccttaaagacctcaaagtgtgtaatgacattaattttgattaacgtttacaaacttttcaa 99419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 4225 - 4078
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||| ||||||||||||||| |||||||||    
T  4225 ttaacttccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaataatatcccaccttcacctaagccccgttataacccttaaagacctc 4126  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||    
T  4125 aaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 4078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 27967 - 28220
Alignment:
Q  25 aaaatctgagtaattttaaactcgattgtcccaaaaagttacaaatattatctagtacctttataa--attgttatttcaaggggtgaatgaggaattga 122  Q
    |||||| |||||| || |||||||||||||||||   |||||||||| | ||||||||| ||| ||  |||||| || ||| || ||||||| | |||||    
T  27967 aaaatccgagtaacttcaaactcgattgtcccaatt-gttacaaataatctctagtacccttacaagaattgttgttccaaagg-tgaatgatggattga 28064  T
Q  123 atccattctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctg 222  Q
    ||   | |||||| || ||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||| |||| ||||||||||     
T  28065 attg-tgctttaactttcgtaggagtgtctaactcaaattttgtgtagcctacttattcaaatattatcccaccttcacctaagccccattataaccctt 28163  T
Q  223 aaagacctcaaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  28164 aaagacctcaaagtgtgaattgacattgattttgattgacgtttagaaacttttcaa 28220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 12307 - 12454
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||||| ||||||||||    
T  12307 tttaacttctgtaggagtgcctaactcaaattttgtgtagcctacttattcaaatattctc-caccttaacctaagccccgttataaccttgaaagacct 12405  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  12406 caaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 12454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 26323 - 26470
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||||| | ||||||||    
T  26323 tttaacttctgtaggagtgcctaactcaaattttgtgtagcctacttattcaaatattctc-caccttaacctaagccccgttataaccataaaagacct 26421  T
Q  231 caaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  26422 caaagtgtgcattgacattgattttgattgacgtttagaaacttttcaa 26470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 943 - 803
Alignment:
Q  139 ccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgt 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||| |||||||||||||||  |||||||||||||||    
T  943 ccgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattattgcaccttcacctaagccccgttataaccctttaagacctcaaagtgt 844  T
Q  239 gtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | | ||| ||||||||||||||| |||||||||||||||||    
T  843 gcattgacattgattttgattgatgtttagaaacttttcaa 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 27901 - 28041
Alignment:
Q  140 cgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctcaaagtgtg 239  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  27901 cgtaggaatgcctaactcaaattttgtgtagcctacttatccaaatattatcccaccttcacctaagccccgttataacccttaaagacctcaaagtgtg 28000  T
Q  240 taatga-tattgattttgattgacgtttagaaacttttcaa 279  Q
     | |||  | |||||||||||||||||||||||| ||||||    
T  28001 cattgacaaatgattttgattgacgtttagaaacctttcaa 28041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 23739 - 23805
Alignment:
Q  214 ataaccctgaaagacctcaaagtgtgtaatgata-ttgattttgattgacgtttagaaacttttcaa 279  Q
    ||||||||  |||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||    
T  23739 ataacccttcaagacctcaaagtgtgcattgacaattgattttgattgacgtttagaaacttttcaa 23805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 23686 - 23741
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaata 186  Q
    |||||| || ||||||| || |||||||||||||| || ||||||||||||||||||    
T  23686 ctttaactttcgtaggagtgtctaactcaaatttt-tgtagcctacttatccaaata 23741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 1441 - 1294
Alignment:
Q  132 ttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc 231  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||| |||| |||||||| |  ||||||||    
T  1441 ttaacttccgtaggaatgcctaactcgaattttgtgtagcctacttatccaaatattatcccaccttcacctaagcccctttataaccttttaagacctc 1342  T
Q  232 aaagtgtgtaatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    || ||||| | ||| ||||||||||||||| |||||||||||||||||    
T  1341 aatgtgtgcattgacattgattttgattgatgtttagaaacttttcaa 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 130 - 279
Target Start/End: Original strand, 28202 - 28349
Alignment:
Q  130 ctttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacc 229  Q
    |||||| || ||||||| ||||||||||||||||| || ||||||||||||||||   ||||||||||| |||| | ||||||||||||||| |||||||    
T  28202 ctttaactttcgtaggagtgcctaactcaaattttttgtagcctacttatccaaa---tatctcaccttcaccttagccccgttataacccttaaagacc 28298  T
Q  230 tcaaagtgtgtaatga-tattgattttgattgacgtttagaaacttttcaa 279  Q
    |||||||||| | |||  |||||||||||||||||||||||||||||||||    
T  28299 tcaaagtgtgcattgacaattgattttgattgacgtttagaaacttttcaa 28349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 49689 - 49551
Alignment:
Q  141 gtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacc-tcaaagtgtg 239  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||| | ||| ||||    
T  49689 gtaggaatgcctaactcaaattttgtgtagcttacttatccaaatattatcccacctttacctaaactccgttataaccct-aaagacctttaaaatgtg 49591  T
Q  240 taatgatattgattttgattgacgtttagaaacttttcaa 279  Q
    | |||| ||  | |||||||||||| ||||||||||||||    
T  49590 tgatgacatgtactttgattgacgtctagaaacttttcaa 49551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 96290 - 96182
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||| ||||||  ||||||||||||||  |||||||    
T  96290 tttaacttccgtaggaatgcctaactcaattgttgtgtagcctacttatccaaatattatcccaccttcacctaagtcccgttataaccctttaagacct 96191  T
Q  231 caaagtgtg 239  Q
    ||| |||||    
T  96190 caatgtgtg 96182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1785 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 468 - 575
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||  |||||| |||| | ||||||||||| |||  |||||||    
T  468 tttaacttccgtagaaatgcctaactcaaatgttgtgtagcctacttatccaaatattattccaccttcacctgatccccgttataa-cctttaagacct 566  T
Q  231 caaagtgtg 239  Q
    |||||||||    
T  567 caaagtgtg 575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 63078 - 63185
Alignment:
Q  131 tttaatttccgtaggaatgcctaactcaaattttgtgcagcctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacct 230  Q
    ||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||  |||||| |||| | ||||||||||| |||  |||||||    
T  63078 tttaacttccgtagaaatgcctaactcaaatgttgtgtagcctacttatccaaatattattccaccttcacctgatccccgttataa-cctttaagacct 63176  T
Q  231 caaagtgtg 239  Q
    |||||||||    
T  63177 caaagtgtg 63185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 40024 - 39955
Alignment:
Q  171 cctacttatccaaatattatctcaccttaacctaaaccccgttataaccctgaaagacctc-aaagtgtgt 240  Q
    ||||||| ||||||||| ||| ||||||||||||| || || ||||||| ||||||||||| |||||||||    
T  40024 cctacttttccaaatat-atcccaccttaacctaagccacgatataaccttgaaagacctctaaagtgtgt 39955  T

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Target: scaffold0718 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 1791 - 1839
Alignment:
Q  193 caccttaacctaaaccccgttataaccctgaaagacctc-aaagtgtgt 240  Q
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T  1791 caccttaacctaagccacgctataaccctgaaagacctctaaagtgtgt 1839  T

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