View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-35-LTR4-TNT-insertion-3 (Length: 215)

Name: Tnk88-35-LTR4-TNT-insertion-3
Description: Tnk88-35-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-35-LTR4-TNT-insertion-3
Tnk88-35-LTR4-TNT-insertion-3
[»] chr3 (1 HSPs)
chr3 (9-170)||(25519986-25520150)
[»] chr5 (7 HSPs)
chr5 (9-104)||(29566595-29566690)
chr5 (9-104)||(38866950-38867045)
chr5 (9-100)||(1758880-1758971)
chr5 (9-104)||(29250449-29250544)
chr5 (9-104)||(29426337-29426432)
chr5 (9-171)||(32432047-32432212)
chr5 (17-104)||(29169368-29169455)
[»] chr4 (5 HSPs)
chr4 (9-100)||(27463058-27463149)
chr4 (9-100)||(27483430-27483521)
chr4 (9-100)||(27519875-27519966)
chr4 (9-98)||(27471659-27471748)
chr4 (9-105)||(18987775-18987871)
[»] chr7 (1 HSPs)
chr7 (9-74)||(1700009-1700074)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 25520150 - 25519986
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataa---aa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||   ||    
T  25520150 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccaattcatcctacaaaaacataaatgaa 25520051  T
Q  106 ttcattcaccatgaaacagtaattagtctaggagtcatatgtatagttttaacttgttatcgcca 170  Q
     ||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  25520050 ctcattcagcatgaaacaaaaattagtctaggagtcatatatatagttttaacttgttatcgcca 25519986  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 29566595 - 29566690
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaa 104  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29566595 tggacacttgaaagtaaggcttaaacactcatcaatccattctacactaacagcttcttcataatcatttcccaattcatcctgcaaaaacataaa 29566690  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 38866950 - 38867045
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaa 104  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  38866950 tggacacttgaaagtaaggcttaaactcttatcaacccactccacactaacagcttcttcataatcatttcccaattcatcctacaaaaacataaa 38867045  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 1758971 - 1758880
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaaca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||    
T  1758971 tggacatttgaaagtaaggcttaaacacttatcaacccactccacactaacagcttcttcataatcattttccaattcatcctacaaaaaca 1758880  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 29250544 - 29250449
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaa 104  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  29250544 tggacacttgaaagtaaggctcaaacacttatcaatccactccacactaacagcttctttataatcatttcccaattcatcctacaaaaacataaa 29250449  T

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Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 29426432 - 29426337
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaa 104  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  29426432 tggacacttgaaagtaaggtttaaactcttatcaacccactccacactaacagcttcttcataatcatttcccgattcatcctacaaaaacataaa 29426337  T

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Target: chr5; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 32432212 - 32432047
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataa---aa 105  Q
    ||||||| | ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| | | |||   |||||| |||| ||| ||   ||    
T  32432212 tggacacctaaaaataaggcttaaacacttttcaatccactctacactaacagcttcttcataatcttctgccaaaccatcctacaaacacaaaaatgaa 32432113  T
Q  106 ttcattcaccatgaaacagtaattagtctaggagtcatatgtatagttttaacttgttatcgccat 171  Q
    ||||| || |||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  32432112 ttcatccagcatgaaacaacaattagtctaggagtcatatatatagttttaacttgttgtcgccat 32432047  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 29169455 - 29169368
Alignment:
Q  17 tgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  29169455 tgaaagtaaggcttaaacacttatcaatccattctacactgacagcttcttcataatcatttcccaattcatcctacaaaatcataaa 29169368  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 27463149 - 27463058
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  27463149 tggacacttgaaagtaaggcttaaacacttatcaacccactccacactaacagcttcttcataatcatttcccaattcatcctacaaaaaca 27463058  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 27483521 - 27483430
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  27483521 tggacacttgaaagtaaggcttaaacacttatcaacccactccacactaacagcttcttcataatcatttcccaattcatcctacaaaaaca 27483430  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 27519875 - 27519966
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  27519875 tggacacttgaaagtaaggcttaaacacttatcaacccactccacactaacagcttcttcataatcatttcccaattcatcctacaaaaaca 27519966  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 27471748 - 27471659
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  27471748 tggacacttgaaagtaaggcttaaacacttatcaacccactccacactaacagcttcttcataatcatttcccaattcatcctacaaaaa 27471659  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 18987871 - 18987775
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatcatttcccagttcatcctgcaaaaacataaaa 105  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||| |||||||| ||||    
T  18987871 tggacacttgaaagtaaggcttaaacacttatcaatccactccacactaacagcttcttcataatcatttcccaattgatcctacaaaaacaaaaaa 18987775  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 1700009 - 1700074
Alignment:
Q  9 tggacacttgaaagtaaggcttaaacacttatcaacccactctacactaacagcttcttcataatc 74  Q
    |||||||||||||||||||||||  || || ||| ||||||||||||| |||||||||||| ||||    
T  1700009 tggacacttgaaagtaaggcttatgcatttttcagcccactctacactcacagcttcttcaaaatc 1700074  T

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