View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-35-LTR4-TNT-insertion-4 (Length: 285)

Name: Tnk88-35-LTR4-TNT-insertion-4
Description: Tnk88-35-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-35-LTR4-TNT-insertion-4
Tnk88-35-LTR4-TNT-insertion-4
[»] chr2 (2 HSPs)
chr2 (8-275)||(16058534-16058800)
chr2 (237-267)||(13685993-13686023)
[»] chr5 (2 HSPs)
chr5 (12-96)||(16418934-16419018)
chr5 (236-267)||(41326617-41326648)
[»] chr8 (4 HSPs)
chr8 (236-267)||(3607035-3607066)
chr8 (236-267)||(4851732-4851763)
chr8 (236-275)||(8551488-8551527)
chr8 (237-267)||(1196507-1196537)
[»] chr7 (1 HSPs)
chr7 (236-267)||(19479440-19479471)
[»] chr6 (1 HSPs)
chr6 (236-275)||(17366849-17366888)
[»] chr4 (5 HSPs)
chr4 (236-267)||(24683075-24683106)
chr4 (236-275)||(26179371-26179410)
chr4 (237-267)||(17847706-17847736)
chr4 (237-275)||(41633217-41633255)
chr4 (237-265)||(47839102-47839130)
[»] chr3 (3 HSPs)
chr3 (236-267)||(11358879-11358910)
chr3 (236-267)||(34624644-34624675)
chr3 (238-267)||(50613043-50613072)
[»] chr1 (4 HSPs)
chr1 (236-267)||(2958839-2958870)
chr1 (236-267)||(34475898-34475929)
chr1 (237-267)||(20808947-20808977)
chr1 (238-267)||(4194767-4194796)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 16058800 - 16058534
Alignment:
Q  8 agaatgtggtggcaacgactaccgtgtgaggcagccgattcaaacccttagtgggttactgttcatatttttcaatcaggttactgttcgttcgctattt 107  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16058800 agaatgtggtggcagcgactaccgtgtgaggcagccagttcaaacccttggtgggttactgttcatatttttcaatcaggttactgttcgttcgctattt 16058701  T
Q  108 ggctttttcaatatccaaatagcaagnnnnnnntggttttgtttttagggagnnnnnnnttatggttaatagcactttttgatatttgtaatagtaagac 207  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||    
T  16058700 ggctttttcaatatccaaatagcaagaaaaaaatggttttgtttttagggag-aaaaaattatggttaatagcactttttgatatttgtaata-taagac 16058603  T
Q  208 caatttaattttagtgtcta-annnnnnnagagcaatgctatatctctagaaaaataacattatgaatt 275  Q
    ||||||||||||| |||||| |       |||||||||||||||||||||||||||||||||| |||||    
T  16058602 caatttaattttaatgtctataattttttagagcaatgctatatctctagaaaaataacattaagaatt 16058534  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 13685993 - 13686023
Alignment:
Q  237 gagcaatgctatatctctagaaaaataacat 267  Q
    |||||||||||||||||||||||||||||||    
T  13685993 gagcaatgctatatctctagaaaaataacat 13686023  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 16419018 - 16418934
Alignment:
Q  12 tgtggtggcaacgactaccgtgtgaggcagccgattcaaacccttagtgggttactgttcatatttttcaatcaggttactgttc 96  Q
    |||||||||| |||| |||||| || || |||| ||||||||| || |||||||||||||||||||| ||||| |||||||||||    
T  16419018 tgtggtggcagcgaccaccgtgagaagcggccggttcaaacccctaatgggttactgttcatattttccaatcgggttactgttc 16418934  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 41326648 - 41326617
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  41326648 agagcaatgctatatctctagaaaaataacat 41326617  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 3607035 - 3607066
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  3607035 agagcaatgctatatctctagaaaaataacat 3607066  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 4851732 - 4851763
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  4851732 agagcaatgctatatctctagaaaaataacat 4851763  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 8551488 - 8551527
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacattatgaatt 275  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  8551488 agagcaatgctatatctctaaaaaaataacattaagaatt 8551527  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 1196507 - 1196537
Alignment:
Q  237 gagcaatgctatatctctagaaaaataacat 267  Q
    |||||||||||||||||||||||||||||||    
T  1196507 gagcaatgctatatctctagaaaaataacat 1196537  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 19479440 - 19479471
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  19479440 agagcaatgctatatctctagaaaaataacat 19479471  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 17366849 - 17366888
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacattatgaatt 275  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  17366849 agagcaatgctatatctctagaaaaacaacattaagaatt 17366888  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 24683075 - 24683106
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  24683075 agagcaatgctatatctctagaaaaataacat 24683106  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 26179410 - 26179371
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacattatgaatt 275  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  26179410 agagcaatgttatatctctagaaaaataacattaagaatt 26179371  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 17847736 - 17847706
Alignment:
Q  237 gagcaatgctatatctctagaaaaataacat 267  Q
    |||||||||||||||||||||||||||||||    
T  17847736 gagcaatgctatatctctagaaaaataacat 17847706  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 41633217 - 41633255
Alignment:
Q  237 gagcaatgctatatctctagaaaaataacattatgaatt 275  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  41633217 gagcaatgttatatctctagaaaaataacattaagaatt 41633255  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 47839130 - 47839102
Alignment:
Q  237 gagcaatgctatatctctagaaaaataac 265  Q
    |||||||||||||||||||||||||||||    
T  47839130 gagcaatgctatatctctagaaaaataac 47839102  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 11358879 - 11358910
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  11358879 agagcaatgctatatctctagaaaaataacat 11358910  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 34624675 - 34624644
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  34624675 agagcaatgctatatctctagaaaaataacat 34624644  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 50613072 - 50613043
Alignment:
Q  238 agcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||    
T  50613072 agcaatgctatatctctagaaaaataacat 50613043  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 2958870 - 2958839
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  2958870 agagcaatgctatatctctagaaaaataacat 2958839  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 34475898 - 34475929
Alignment:
Q  236 agagcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||||    
T  34475898 agagcaatgctatatctctagaaaaataacat 34475929  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 20808947 - 20808977
Alignment:
Q  237 gagcaatgctatatctctagaaaaataacat 267  Q
    |||||||||||||||||||||||||||||||    
T  20808947 gagcaatgctatatctctagaaaaataacat 20808977  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 4194767 - 4194796
Alignment:
Q  238 agcaatgctatatctctagaaaaataacat 267  Q
    ||||||||||||||||||||||||||||||    
T  4194767 agcaatgctatatctctagaaaaataacat 4194796  T

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