View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-1 (Length: 235)
Name: Tnk88-37-LTR4-TNT-insertion-1
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 36676063 - 36675856
Alignment:
| Q |
18 |
aatattagtttaacaaccctagtagaaccttaattaagcatggtattattataatttgttttcttaccgcaatgaatgggtcaaaaggaatgagagcata |
117 |
Q |
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| T |
36676063 |
aatattagtttaacaaccctagtagaaccttaattaagcatggtattattataatttattttcttaccgcaatgaatgggtcaaaaggaatgagagcata |
36675964 |
T |
|
| Q |
118 |
aatggtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactaggttctgcaaccataga |
217 |
Q |
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| T |
36675963 |
aatggtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaaccataga |
36675864 |
T |
|
| Q |
218 |
ttatatta |
225 |
Q |
| |
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|||||||| |
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| T |
36675863 |
ttatatta |
36675856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 36686145 - 36685938
Alignment:
| Q |
18 |
aatattagtttaacaaccctagtagaaccttaattaagcatggtattattataatttgttttcttaccgcaatgaatgggtcaaaaggaatgagagcata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686145 |
aatattagtttaacaaccctagtagaaccttaattaagcatggtattattataatttattttcttaccgcaatgaatgggtcaaaaggaatgagagcata |
36686046 |
T |
|
| Q |
118 |
aatggtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactaggttctgcaaccataga |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36686045 |
aatggtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaaccataga |
36685946 |
T |
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| Q |
218 |
ttatatta |
225 |
Q |
| |
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|||||||| |
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| T |
36685945 |
ttatatta |
36685938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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