View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-11 (Length: 399)
Name: Tnk88-37-LTR4-TNT-insertion-11
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 55 - 371
Target Start/End: Complemental strand, 12661622 - 12661301
Alignment:
| Q |
55 |
tcagtattcaacggaaacactccaacgtttacgtaaatcaacaactactttcgaatcaggtttcgccatactttatcttttgaggtggttggaagatatt |
154 |
Q |
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| T |
12661622 |
tcagtattcaacagaaacactccaacgtttacgtaaatcaacaactactttcgaatcaggtttcgccatactttatcttttgaggtggttggaagatatt |
12661523 |
T |
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| Q |
155 |
gaccgtgtctagaaagggggtgtgaatagaatcatagatactctttgataaaaactttttgcgaggatgtgtgtaattgaaccgacgtattttcgaacaa |
254 |
Q |
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| T |
12661522 |
gaccgtgtctagaaagggggtgtgaatagaatcatagatactctttgataaaaactttttgcgaggatgtgtgtaattgaaccgacgtattttcgaacaa |
12661423 |
T |
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| Q |
255 |
a---------aaagaagaaccgacgtacgaaaataccgattaagatagtgcaaagcacaacaagctaagtaagactaagaatagtgaactatacaaataa |
345 |
Q |
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| T |
12661422 |
aaaaaaaaagaaaaaagaaccgacgtacgaaaataccaattaagatagtgcaaagcacaacaagc----aaagactaagaatagtgaactatacaaataa |
12661327 |
T |
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| Q |
346 |
ttcattgattgtgaaattcaattgat |
371 |
Q |
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| T |
12661326 |
ttcattgattgtgaaattcaattgat |
12661301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 12661800 - 12661750
Alignment:
| Q |
7 |
agatactacgatcattcagcaaacaaatgatcgcataaacaaacacagtca |
57 |
Q |
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| T |
12661800 |
agatactacgatcattcagcaaacaaatgatcgcataaacaaacacagtca |
12661750 |
T |
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