View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-12 (Length: 385)
Name: Tnk88-37-LTR4-TNT-insertion-12
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-12 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 46641802 - 46641427
Alignment:
| Q |
7 |
acaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagacacacac |
106 |
Q |
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| T |
46641802 |
acaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagacacacac |
46641703 |
T |
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| Q |
107 |
taagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttagaacaagaag |
206 |
Q |
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| T |
46641702 |
taagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttagaacaagaag |
46641603 |
T |
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| Q |
207 |
aaaggtttttgattgaagatggcaatgttggctaaatattgcaaaaacatgtaaatcnnnnnnnnnnnnnnncttnnnnnnnnntatatttatttttaca |
306 |
Q |
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| T |
46641602 |
aaaggtttttgattgaagatggcaatgttggctaaatattgcaaaaacatgtaaatc---ttttttttttttcttaagaaagaatatatttatttttaca |
46641506 |
T |
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| Q |
307 |
aataaattatcaatcaaatatggaactttcaataccaattctctcaagtacctattcttcaataacaatctctgacagt |
385 |
Q |
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| T |
46641505 |
gataaattatcaatcagatatggaaccttcaatacaaattctctcaagtagctattcttcgataacaatctctgacagt |
46641427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 46173026 - 46172803
Alignment:
| Q |
11 |
agcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagac------acac |
104 |
Q |
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| T |
46173026 |
agcactagaaacagaccgttgacagttagagcattggaatgtatagcaaatgaatatttgcatgtacagaagaaacaaaaaaagaaagacagccagaccc |
46172927 |
T |
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| Q |
105 |
actaagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttagaacaaga |
204 |
Q |
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| T |
46172926 |
acaaagatcttttcaatccttgccgcaaggctcgaacaaaaggcaaatcaacactgcatcgtcattgttcagatcacgggaatgcagttgcagtacaaga |
46172827 |
T |
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| Q |
205 |
agaaaggtttttgattgaagatgg |
228 |
Q |
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| T |
46172826 |
agaaaagcatttgattggagatgg |
46172803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 46630776 - 46630949
Alignment:
| Q |
30 |
tgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagaca------cacactaagatcctttcaatcc |
123 |
Q |
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| T |
46630776 |
tgacagttagagcattggaatatatagcaaatgaattcttgcatgtgccaaagaggcaaaaaaggaaagacatccagacgcaacaagatcatctcaatcc |
46630875 |
T |
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| Q |
124 |
ttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttag |
197 |
Q |
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| T |
46630876 |
ttgctgcaaggattgtaaaagaggcaaaacaatgctgcctcgtcattgttcagatcatggtactgcagttttag |
46630949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 46620284 - 46620440
Alignment:
| Q |
35 |
gttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagaca------cacactaagatcctttcaatccttgcg |
128 |
Q |
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| T |
46620284 |
gttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaagatatccagacacaccaagatcctttcaatccttgcc |
46620383 |
T |
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| Q |
129 |
gcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatggga |
185 |
Q |
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| T |
46620384 |
gcaaggctcgtacatgaggcaaaataatgctgcatcgttgttgttcagatcatggga |
46620440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 46639002 - 46639182
Alignment:
| Q |
35 |
gttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagaca------cacactaagatcctttcaatccttgcg |
128 |
Q |
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| T |
46639002 |
gttagagcattggaatgtatagcaaatgaattcctgcatgtgccaaagagacagaaaaagaaagacatccagacacaccaagatcctttcaatccttgtc |
46639101 |
T |
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| Q |
129 |
gcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttagaacaagaagaaa |
209 |
Q |
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| T |
46639102 |
gcaaggctcgtacatgaggcaaaataatgctgcattattgttgttcagatcatgggactacaattttagcgcaagaagaaa |
46639182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 15768172 - 15767970
Alignment:
| Q |
7 |
acaaagcactagaaacagatcgctgacagttagagcattggaatgtattgcaaatgaatttttgcatgtgcaaagtagacataaaaggagagac------ |
100 |
Q |
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| T |
15768172 |
acaaagcactagaaacagaccgttgacagttagagcattagaatgtatagcaaatgaatacctgcacgtacaaaagagacaaaaaaagaaagacatccag |
15768073 |
T |
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| Q |
101 |
acacactaagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgcagttttagaac |
200 |
Q |
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| T |
15768072 |
acacatgaagatcctttcaatccttgctgcagtgctcaaacaaaaggcaaatcaat------tcatcattgttcagatcatggtaattcagttttagcac |
15767979 |
T |
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| Q |
201 |
aagaagaaa |
209 |
Q |
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| T |
15767978 |
aagaagaaa |
15767970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 1537855 - 1537937
Alignment:
| Q |
108 |
aagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtcgtcattgttcagatcatgggaatgca |
190 |
Q |
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| T |
1537855 |
aagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcttcgtctttgttaagatcatgggaatgca |
1537937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 18373891 - 18373850
Alignment:
| Q |
168 |
attgttcagatcatgggaatgcagttttagaacaagaagaaa |
209 |
Q |
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| T |
18373891 |
attgttcagatcatgggactgcagttttagcacaagaagaaa |
18373850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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