View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-16 (Length: 363)
Name: Tnk88-37-LTR4-TNT-insertion-16
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-16 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 23142025 - 23142367
Alignment:
| Q |
10 |
cgtaagtgattctatcatgtaagtgattatttcaatgttataaaacttgcaccacgttaatatcaatatgtaatgccatttaaagtctacgcttttcggt |
109 |
Q |
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| T |
23142025 |
cgtaagtgattatatcatgtaagtgattatttccatgttataaaacttgcaccacgttaatatcaatatgtaatgccattcaaagtctacgcttttcggt |
23142124 |
T |
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| Q |
110 |
tatggccatgtctacaatcattgcttacctattaaacttaaaatcttgcaaatttcagtatgattgaatatttcaatcagattcattcttcaaataatat |
209 |
Q |
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| T |
23142125 |
tatggccatagacacaatcattgcttacctattaaacttaaaatcttgcaaatttcagtatgattgaatatatcaatcagattcattcttcaaataatat |
23142224 |
T |
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| Q |
210 |
agtcataaaaaattgtcatcattcaaatgtcaacccaggaaagaagcttctacgtttaccnnnnnnnnnagcaaaatttgtacgtttacctcaaaaatgt |
309 |
Q |
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| T |
23142225 |
agtcataaaaaattgtcatcgttcaaatgtcaacccagaaaagaagcttctacgtttacc-ttttttttagcaaaatttgtacgtttaccttaaaaatgt |
23142323 |
T |
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| Q |
310 |
caatttgtattagtcaaaggcagattctttcggggattagaatt |
353 |
Q |
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| T |
23142324 |
caatttgtattagtcaaaggtagattctttcggggattagaatt |
23142367 |
T |
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