View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-37-LTR4-TNT-insertion-3 (Length: 188)

Name: Tnk88-37-LTR4-TNT-insertion-3
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-37-LTR4-TNT-insertion-3
Tnk88-37-LTR4-TNT-insertion-3
[»] chr5 (3 HSPs)
chr5 (10-178)||(22787574-22787742)
chr5 (23-123)||(26679249-26679349)
chr5 (23-123)||(26950856-26950956)
[»] scaffold0381 (1 HSPs)
scaffold0381 (20-174)||(8419-8573)
[»] chr4 (1 HSPs)
chr4 (20-174)||(27011213-27011367)
[»] chr3 (5 HSPs)
chr3 (14-178)||(54563043-54563207)
chr3 (19-177)||(12528109-12528267)
chr3 (20-173)||(44493623-44493776)
chr3 (113-171)||(14483972-14484030)
chr3 (20-78)||(4481388-4481446)
[»] chr1 (2 HSPs)
chr1 (104-174)||(38490485-38490555)
chr1 (20-125)||(17177365-17177470)
[»] chr7 (2 HSPs)
chr7 (20-78)||(8863716-8863774)
chr7 (33-164)||(17207652-17207783)
[»] chr8 (2 HSPs)
chr8 (19-79)||(13701992-13702052)
chr8 (104-174)||(36307620-36307690)
[»] chr6 (1 HSPs)
chr6 (149-177)||(11605787-11605815)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 22787574 - 22787742
Alignment:
Q  10 aggttctgttagaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgat 109  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22787574 aggttctgttagaaattttcattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaacccaaacccctctgagttttatgaatcgat 22787673  T
Q  110 agtttttctcaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacgaatta 178  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22787674 agtttttcccaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaatgaatta 22787742  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 26679349 - 26679249
Alignment:
Q  23 aatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctcaac 122  Q
    ||||||||  ||||||| |||||||| || | ||||||||| || ||||| |||||| ||| ||| |  ||||| ||||| | |||||||||||| ||||    
T  26679349 aatttccaaccttgcttacccaacatagccaaattgaaagccgaaaggtctttgaaacccatacctccttgagtcttatgcaccgatagtttttcccaac 26679250  T
Q  123 t 123  Q
    |    
T  26679249 t 26679249  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 26950956 - 26950856
Alignment:
Q  23 aatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctcaac 122  Q
    ||||||||  ||||||| |||||||| || | ||||||||| || ||||| |||||| ||| ||| |  ||||| ||||| | |||||||||||| ||||    
T  26950956 aatttccaaccttgcttacccaacatagccaaattgaaagccgaaaggtctttgaaacccatacctccttgagtcttatgcaccgatagtttttcccaac 26950857  T
Q  123 t 123  Q
    |    
T  26950856 t 26950856  T

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Target: scaffold0381 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 8573 - 8419
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctc 119  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||| || || ||||| || |    
T  8573 agaaatttccacgcttgcttacctaacatcgcaagattgaaagctgagagatccttgaaacccattcccctgtgagttttatgcatggacagtttctccc 8474  T
Q  120 aactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacga 174  Q
    |||| |||||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  8473 aacttaaccaatttatacctctatgtgcggttctgccatgcccccaccaaaacga 8419  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 27011213 - 27011367
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctc 119  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||| || || ||||| || |    
T  27011213 agaaatttccacgcttgcttacctaacatcgcaagattgaaagctgagagatccttgaaacccattcccctgtgagttttatgcatggacagtttctccc 27011312  T
Q  120 aactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacga 174  Q
    |||| |||||| ||||||||||||| | |||||||||||| ||||||||||||||    
T  27011313 aacttaaccaatttatacctctatgtgcggttctgccatgcccccaccaaaacga 27011367  T

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Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 54563043 - 54563207
Alignment:
Q  14 tctgttagaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtt 113  Q
    |||||||| ||||||||  |||||||||||||||||||||| |||||||| || | |||||||||  |||||||||  ||  |||||||||||||||| |    
T  54563043 tctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatcccaaacccccatggattttatgaatcgatagct 54563142  T
Q  114 tttctcaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacgaatta 178  Q
    |||| |||||||||||| | || |||||| ||||  |||||||||||||||||||||| ||||||    
T  54563143 tttcccaactcaaccaattaatgcctctacgagtatttctgccatgaccccaccaaaatgaatta 54563207  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 12528109 - 12528267
Alignment:
Q  19 tagaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttct 118  Q
    ||||| ||||||  ||||||| || |||||||||||||||||||| ||||| || |||||| |||  ||||  ||||||||||| || || | ||| ||     
T  12528109 tagaagtttccacgcttgcttacctaacatcgcaagattgaaagccgagagatcattgaaacccattcccccatgagttttatgcatggacaatttctcc 12528208  T
Q  119 caactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacgaatt 177  Q
    ||||| | |||| ||||||||||||| |||||  ||||||| |||||||||||||||||    
T  12528209 caacttagccaatttatacctctatgtgtggtcatgccatgcccccaccaaaacgaatt 12528267  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 44493776 - 44493623
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctc 119  Q
    |||||||||||  | ||||| ||||||||||||||||||||||||||||| || || ||| |||  || |  || |||||||| ||||||| |||||| |    
T  44493776 agaaatttccagccctgcttacccaacatcgcaagattgaaagctgagagatctttaaaacccatgccaccatgtgttttatgcatcgataatttttccc 44493677  T
Q  120 aactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacg 173  Q
    |||||| |||| | || || | |||||  ||||||||||| |||||||||||||    
T  44493676 aactcatccaattcatgccccgatgagaagttctgccatggccccaccaaaacg 44493623  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 14484030 - 14483972
Alignment:
Q  113 ttttctcaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaa 171  Q
    ||||| |||||||||||| |||| || ||||||||||||||||| || |||||||||||    
T  14484030 ttttcccaactcaaccaatttatgcccctatgagtggttctgccgtgcccccaccaaaa 14483972  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 4481388 - 4481446
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaa 78  Q
    |||||||||||  ||||||| |||||||| |||||||||||||| || || ||||||||    
T  4481388 agaaatttccacccttgctttcccaacattgcaagattgaaagccgaaagatccttgaa 4481446  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 38490485 - 38490555
Alignment:
Q  104 atcgatagtttttctcaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacga 174  Q
    ||||| || ||||| |||||||||||| ||||||||||||| |  ||||| ||||||||||||||||||||    
T  38490485 atcgaaagcttttcccaactcaaccaatttatacctctatgcgaagttctaccatgaccccaccaaaacga 38490555  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 17177470 - 17177365
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctc 119  Q
    |||||||||||  ||||||| || ||||||||||||||||| || ||||| ||||||||| |||  ||||  ||||||||||| || || ||||| || |    
T  17177470 agaaatttccacgcttgcttacctaacatcgcaagattgaacgccgagagatccttgaaacccattcccccgtgagttttatgcatggacagtttctccc 17177371  T
Q  120 aactca 125  Q
    ||||||    
T  17177370 aactca 17177365  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 8863716 - 8863774
Alignment:
Q  20 agaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaa 78  Q
    |||||||||||  ||||||| ||||||||||||||||||||||| || || ||||||||    
T  8863716 agaaatttccacccttgctttcccaacatcgcaagattgaaagccgaaagatccttgaa 8863774  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 17207652 - 17207783
Alignment:
Q  33 cttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaatccaaacccctctgagttttatgaatcgatagtttttctcaactcaaccaagt 132  Q
    ||||||| || || ||||||||||||||||||||||| ||||||||| | |  ||||  |||| ||| || || || |  ||||| ||||| | |||| |    
T  17207652 cttgctttcctaatatcgcaagattgaaagctgagagatccttgaaacctattcccccttgagatttgtgcatggacaacttttcccaactaagccaatt 17207751  T
Q  133 tatacctctatgagtggttctgccatgacccc 164  Q
    ||| ||| ||||||||||||| || |||||||    
T  17207752 tatgcctttatgagtggttctaccgtgacccc 17207783  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 13701992 - 13702052
Alignment:
Q  19 tagaaatttccattcttgcttgcccaacatcgcaagattgaaagctgagaggtccttgaaa 79  Q
    ||||||||| ||  ||||||| || |||||||||||||||||||| ||||| |||||||||    
T  13701992 tagaaattttcacgcttgcttacctaacatcgcaagattgaaagccgagagatccttgaaa 13702052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 36307620 - 36307690
Alignment:
Q  104 atcgatagtttttctcaactcaaccaagttatacctctatgagtggttctgccatgaccccaccaaaacga 174  Q
    ||||| || ||||| || ||||||||| |||||||||| || |  ||||| ||||||||||||||||||||    
T  36307620 atcgaaagcttttcccagctcaaccaatttatacctctgtgcgaagttctaccatgaccccaccaaaacga 36307690  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 11605787 - 11605815
Alignment:
Q  149 gttctgccatgaccccaccaaaacgaatt 177  Q
    |||||||||||||||||||||||||||||    
T  11605787 gttctgccatgaccccaccaaaacgaatt 11605815  T

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