View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-4 (Length: 412)
Name: Tnk88-37-LTR4-TNT-insertion-4
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 39780006 - 39779678
Alignment:
| Q |
10 |
taagatgtccatgcttgattgatttgatagagtagaatgaat-agcaaaagactgcggattttatagagaaaacattggtgagaagaatagttatagtta |
108 |
Q |
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| T |
39780006 |
taagatgtccatgcttgattgatttgatagagtagattaattgaacaaaagactgcggattttatagagaaaacattggtgagaagaatagttatagtta |
39779907 |
T |
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| Q |
109 |
ctctataaaatcaagattgacctttcattatctccttgattaccacttttctctcttacacaaaatcaagattgaaaaagaaaatgataacactttattt |
208 |
Q |
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| T |
39779906 |
ctctataaa-tcaagattgacctttcattatctccttgattaccacttttctctcttacacaaaatcaagattgaaaaagaaaatgataacactttattt |
39779808 |
T |
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| Q |
209 |
catactctggacaagaaagacactatacatatatcaaacaagtatgcacttttcagctcaagatcataccttgatcaataatgagagtgggaatttcgtt |
308 |
Q |
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| T |
39779807 |
catactctggacaagaaagacactatacatatatcaaacaagtatgcacttttcagctcaagatcataccttgatcaataatgagagtgggaatttcgtt |
39779708 |
T |
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| Q |
309 |
tttgtcttccttcttcttctccaaagaatt |
338 |
Q |
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| T |
39779707 |
tttgtcttccttcttcttctccaaagaatt |
39779678 |
T |
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