View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-7 (Length: 559)
Name: Tnk88-37-LTR4-TNT-insertion-7
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 198 - 549
Target Start/End: Original strand, 13729311 - 13729662
Alignment:
| Q |
198 |
taaattatacttaagatttcattttgattgggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
297 |
Q |
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| T |
13729311 |
taaattatacttaagatttcattttgatttggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
13729410 |
T |
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| Q |
298 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
397 |
Q |
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| T |
13729411 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
13729510 |
T |
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| Q |
398 |
cggatgtttagtttctctgctcagcatttttagtttccctcttcaaaaacgcctatttcgcaacactcttcaccaccttttcccctctatctttctatag |
497 |
Q |
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| T |
13729511 |
cggatgtttagtttctctgctcagcatttttagtttccctcttcaaaaacgcctatttcgcaacactcttcaccactttttcccctctatctttctatag |
13729610 |
T |
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| Q |
498 |
ctctctcacctactttgaattctctattactatgatgacaccagaatcatta |
549 |
Q |
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| T |
13729611 |
ctctctcacctactttgaattctctattactatgatggcaccagaatcatta |
13729662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 13728739 - 13728935
Alignment:
| Q |
10 |
gtcccatcctttatcagcagctaaaccaatagcggtttgggtttgagtgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaatta |
109 |
Q |
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| T |
13728739 |
gtcccaacctttatcagcagctaaaccaatagcggtttgggtttgagcgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaatta |
13728838 |
T |
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| Q |
110 |
agatttccctttaagatttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaacttttaaattata |
206 |
Q |
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| T |
13728839 |
agatttccctttaagatttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattata |
13728935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 13728852 - 13728903
Alignment:
| Q |
167 |
agatttcaatgccaaaaattgttctaacttttaaattatacttaagatttca |
218 |
Q |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttca |
13728903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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