View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-37-LTR4-TNT-insertion-8 (Length: 221)
Name: Tnk88-37-LTR4-TNT-insertion-8
Description: Tnk88-37-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-37-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 1144714 - 1144910
Alignment:
| Q |
9 |
tcagttctaaaatggttccttctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattg |
108 |
Q |
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| T |
1144714 |
tcagttctaaaatggttccttctaattaaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattg |
1144813 |
T |
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| Q |
109 |
ttcaaatgaactaaatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcat |
206 |
Q |
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| T |
1144814 |
ttcaaatgaact-aatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcat |
1144910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 8296374 - 8296570
Alignment:
| Q |
9 |
tcagttctaaaatggttccttctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattg |
108 |
Q |
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| T |
8296374 |
tcagttctaaaatggttgcttccaattgaaattatgaaacatgaggatcaacaattcatatatttttc-tcatttggtaagttagagaagaatttgattg |
8296472 |
T |
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| Q |
109 |
ttcaaatgaactaaatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcat |
206 |
Q |
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| T |
8296473 |
ttataatgaactaaatgaaaccaaaaccaaagtttcaagcaaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttcat |
8296570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 18280371 - 18280175
Alignment:
| Q |
9 |
tcagttctaaaatggttccttctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattg |
108 |
Q |
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||||||||||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||||||| ||| ||||| || ||||||||||||||||| |
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| T |
18280371 |
tcagttctaaaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgatttttc-tcagttggtccgttagagaagaatttgattg |
18280273 |
T |
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| Q |
109 |
ttcaaatgaactaaatgaagccaaaaccaaagttccaagcaaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttcat |
206 |
Q |
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| T |
18280272 |
gtataatgaactaaatgaagccaaaaccaaagtttcaagcaaatttaaagacaatgttcactcttttggtttttaaatatgcaaaaaccaaacttcat |
18280175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 8300088 - 8300144
Alignment:
| Q |
148 |
caaatttaaaggcaaagttcaaacttttggtttttaaatatgcaaaaaacaaacttc |
204 |
Q |
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| T |
8300088 |
caaatttaaagacaaagttcactcttttggtttttaaatatgcaaaaaccaaacttc |
8300144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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