View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-1 (Length: 206)
Name: Tnk88-4-LTR4-TNT-insertion-1
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 42898053 - 42897868
Alignment:
| Q |
10 |
aaagagaatcatacgtagatataccagtaagttcattagtgtagccactatctgtgcatataactttgtctttccgaaaccttgtgcccgaacacaaaga |
109 |
Q |
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| T |
42898053 |
aaagagaatcatacgtagatataccagtaagttcattagtgtagccactatctgtgcaaataactttgtctttccgaaaccttgtgctcgaacac--aga |
42897956 |
T |
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| Q |
110 |
gatgatcatctaatcgcttcaccgcttcctaagatatgtcatttgaaccgtgtttatatagtcatgtacccttagtaagtgacaattg |
197 |
Q |
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| T |
42897955 |
gatgatcatctaatcgcttcaccgcttcctaagatatgtcatttgaactgtgtgtatatagtcatgtacccttggtaagtgacaattg |
42897868 |
T |
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