View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-10 (Length: 257)
Name: Tnk88-4-LTR4-TNT-insertion-10
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 3203268 - 3203028
Alignment:
| Q |
7 |
aggttctagaagagaatgaggaggttctgtcaattcgaccggaaaagattttctcattgcacacaactcacactccaagcttcttggggttgcaacagaa |
106 |
Q |
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| T |
3203268 |
aggttctagaagagaatgaggaggttctgtcaattcgaccagaaaagattttctcattacacacaactcacactccaagcttcttggggttgcaacagaa |
3203169 |
T |
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| Q |
107 |
tcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgaggga |
206 |
Q |
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| T |
3203168 |
tcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgaggga |
3203069 |
T |
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| Q |
207 |
atgccttctccacctgcaaaatggaatggccattgtgaatt |
247 |
Q |
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| T |
3203068 |
atgccttctccacctgcaaaatggaatggccattgtgaatt |
3203028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 3209238 - 3209002
Alignment:
| Q |
11 |
tctagaagagaatgaggaggttctgtcaattcgaccggaaaagattttctcattgcacacaactcacactccaagcttcttggggttgcaacagaatcaa |
110 |
Q |
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| T |
3209238 |
tctagaagagaatgaggaggttctatcaactcggctggagaaaatgtattcattacacacaactcacacttcaagcttcttggggttacaacaaaatcaa |
3209139 |
T |
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| Q |
111 |
gaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgc |
210 |
Q |
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| T |
3209138 |
gacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctcacatccttccttttctgatgaggggatgc |
3209039 |
T |
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| Q |
211 |
cttctccacctgcaaaatggaatggccattgtgaatt |
247 |
Q |
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| T |
3209038 |
cttcaccacctgcaaaatggaatggccattgtgaatt |
3209002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 3217186 - 3216950
Alignment:
| Q |
11 |
tctagaagagaatgaggaggttctgtcaattcgaccggaaaagattttctcattgcacacaactcacactccaagcttcttggggttgcaacagaatcaa |
110 |
Q |
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| T |
3217186 |
tctagaagagaaggaggaggttctatcaattcgaccagaaaacatcctctcattacatacaactcacacaccaagcttcttggggttgcaacagagtcaa |
3217087 |
T |
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| Q |
111 |
gaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgc |
210 |
Q |
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| T |
3217086 |
ggattatggataaattccaatctcggtaaagggatcataattggaatcctggacacaggaatatccctctcccatccttccttttctgacgagggaatgc |
3216987 |
T |
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| Q |
211 |
cttctccacctgcaaaatggaatggccattgtgaatt |
247 |
Q |
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| T |
3216986 |
cctctccacctgcaaaatggaatggccactgtgaatt |
3216950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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