View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-12 (Length: 469)
Name: Tnk88-4-LTR4-TNT-insertion-12
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 29939195 - 29939646
Alignment:
| Q |
8 |
ccaagggatcggcaaatgagaaaagcttgtataaggatactgtgttggtggtttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatc |
107 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29939195 |
ccaaaggatcagcaaatgagaaaagcttgtataaggatactgtgttggtgatttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatc |
29939294 |
T |
|
| Q |
108 |
ttcaactggttgaagactcgcaatatctccttccaaacccgtcgccattttcttgaaggaagacttgttttgcttaaaaccacctctgccagtgactgta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29939295 |
ttcaactggttgaagactcgcaatatctccttccaaacccgtcgccattttcttgaaggaagacttgttttgcttaaaaccacctctgccagtgactgta |
29939394 |
T |
|
| Q |
208 |
aattcaaaacagttgcagaaaaataattccaatttcaagttagtaagagaacaagacagtgttcttcaaagtttaatattattttttcatggtttgtctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29939395 |
aattcaaaacagttgcagaaaaataattccaatttcaagttagtaagagaacaagatagtgttcttcaaagtttaatattattttttcatggtttgtctt |
29939494 |
T |
|
| Q |
308 |
gttgtttatgcctttagtttgtaaagaagattacggcttctcctcgttttaaaaaagtggtagtgtaataggttgatgtatgcaaaatttctagttcata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29939495 |
gttgtttatgcctttagtttgtaaagaagattacggcttctcctcgttttaaaaaagtggtagtgtaataggttgatgtatgcaaaatttctagttcata |
29939594 |
T |
|
| Q |
408 |
ataatatatattcaaatcatgttgtactggtaaaattattttaaatagatta |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29939595 |
ataatatatattcaaatcatgttgtactggtaaaattattttaaatagatta |
29939646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 51155002 - 51154730
Alignment:
| Q |
13 |
ggatcggcaaatgagaaaagcttgtataaggatactgtgttggtggtttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatcttcaa |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| | || || | |||| ||| |
|
|
| T |
51155002 |
ggatcagcaaatgagaaaagcttgtataagggtactgtattggtggtttcatctttgtccttgctcttgtctgaatcttgcatgctatcatgatctacaa |
51154903 |
T |
|
| Q |
113 |
ctggttgaagactcgcaatatctccttccaaac------ccgtcgccattttcttgaaggaagacttg-ttttgcttaaaaccacctctgccagtgactg |
205 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||| |||| |||||||| ||| ||| ||||||| |||| ||| ||||| ||||||||||||| | |
|
|
| T |
51154902 |
ctggttgaacactcacaatttctccttccaaactgatatccgttgccattttgttggagggagacttgtttttccttcaaacc-cctctgccagtgatgg |
51154804 |
T |
|
| Q |
206 |
taaattcaaaacagttgcagaaaaataattccaatttcaagttagta--agagaacaagacagtgttcttcaaa |
277 |
Q |
| |
|
||| || ||||||| |||||||||| ||||||| |||||||||| | | | ||||||| ||||||||||||| |
|
|
| T |
51154803 |
taagtttaaaacagctgcagaaaaagcattccaaattcaagttagcaacaaacaacaagatagtgttcttcaaa |
51154730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 51143858 - 51143728
Alignment:
| Q |
13 |
ggatcggcaaatgagaaaagcttgtataaggatactgtgttggtggtttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatcttcaa |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| | |||||||| |
|
|
| T |
51143858 |
ggatcagcaaatgagaaaagcttgtataagggtactgttttggtggttacatctttgtccttgctcttctctgaatcttgattgctgtcatgatcttcaa |
51143759 |
T |
|
| Q |
113 |
ctggttgaagactcgcaatatctccttccaa |
143 |
Q |
| |
|
||||||||| |||| ||| ||| |||||||| |
|
|
| T |
51143758 |
ctggttgaacactcacaaaatcgccttccaa |
51143728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 51197252 - 51197150
Alignment:
| Q |
19 |
gcaaatgagaaaagcttgtataaggatactgtgttggtggtttcatctttgtccttgctcttctctgaatcttgctttctgtcttcatcttcaactggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||| |||||||||||||| ||| | |||| ||||||||| |
|
|
| T |
51197252 |
gcaaatgagaaaagcttgtataagggtactgtattggtggtttcatctttagcctttttcttttctgaatcttgcttgctgccagaatctacaactggtt |
51197153 |
T |
|
| Q |
119 |
gaa |
121 |
Q |
| |
|
||| |
|
|
| T |
51197152 |
gaa |
51197150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 51143700 - 51143610
Alignment:
| Q |
199 |
gtgactgtaaattcaaaacagttgcagaaaaataattccaatttcaagttagta--agagaacaagacagtgttcttcaaagtttaatatt |
287 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||| ||| ||||||||| || ||| ||||||| ||||||| ||||| ||||||||| |
|
|
| T |
51143700 |
gtgacagtaaattcaaaacagctgcagaaaaatcatttcaaattcaagttattaccagacaacaagatagtgttcgtcaaactttaatatt |
51143610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 456
Target Start/End: Complemental strand, 51154404 - 51154319
Alignment:
| Q |
371 |
tgtaataggttgatgtatgcaaaatttctagttcataataatatata-ttcaaatcatgttgtactggtaaaattattttaaataga |
456 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || ||||||||| |||| || |||||||| |||| |||| ||||| |||||| |
|
|
| T |
51154404 |
tgtaataggttgatgtatgcaaaattccttgttc-tattaatatatagttcagattatgttgtattggtcaaataatttttaataga |
51154319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University