View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-4-LTR4-TNT-insertion-14 (Length: 783)

Name: Tnk88-4-LTR4-TNT-insertion-14
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-4-LTR4-TNT-insertion-14
Tnk88-4-LTR4-TNT-insertion-14
[»] chr1 (4 HSPs)
chr1 (427-783)||(40121590-40121937)
chr1 (341-432)||(44782186-44782277)
chr1 (341-432)||(46679718-46679809)
chr1 (379-432)||(33773216-33773269)
[»] chr8 (7 HSPs)
chr8 (216-432)||(30634107-30634323)
chr8 (8-184)||(30633824-30633999)
chr8 (341-418)||(1175143-1175220)
chr8 (349-432)||(1173524-1173607)
chr8 (341-408)||(35673335-35673402)
chr8 (359-416)||(35674858-35674915)
chr8 (377-432)||(44687164-44687219)
[»] chr5 (8 HSPs)
chr5 (341-432)||(8081518-8081609)
chr5 (341-430)||(25725811-25725900)
chr5 (338-432)||(40382757-40382851)
chr5 (341-416)||(10410830-10410905)
chr5 (341-432)||(25502028-25502119)
chr5 (341-432)||(25506941-25507032)
chr5 (341-408)||(6742582-6742649)
chr5 (345-408)||(10412411-10412474)
[»] chr4 (3 HSPs)
chr4 (341-432)||(4847691-4847782)
chr4 (341-416)||(28395556-28395631)
chr4 (377-433)||(8005918-8005974)
[»] chr3 (6 HSPs)
chr3 (341-432)||(41874526-41874617)
chr3 (341-433)||(28133735-28133827)
chr3 (341-416)||(27682223-27682298)
chr3 (341-408)||(4602333-4602400)
chr3 (341-433)||(4609120-4609212)
chr3 (377-431)||(35244181-35244235)
[»] chr7 (2 HSPs)
chr7 (349-431)||(29924647-29924729)
chr7 (349-407)||(21464553-21464611)
[»] chr2 (11 HSPs)
chr2 (341-432)||(1015737-1015828)
chr2 (341-432)||(17308703-17308794)
chr2 (341-409)||(14007778-14007846)
chr2 (336-416)||(45035187-45035267)
chr2 (341-432)||(30191596-30191687)
chr2 (353-432)||(33187188-33187267)
chr2 (341-416)||(45033392-45033467)
chr2 (377-432)||(41602465-41602520)
chr2 (341-407)||(3372455-3372521)
chr2 (378-432)||(25302825-25302879)
chr2 (377-432)||(25306820-25306875)
[»] chr6 (3 HSPs)
chr6 (341-410)||(15689072-15689141)
chr6 (349-432)||(34350345-34350428)
chr6 (366-416)||(9373599-9373649)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 427 - 783
Target Start/End: Original strand, 40121590 - 40121937
Alignment:
Q  427 caattgacaacataataaaggtgttgtagtcaaaggaaaggtgttgtagtcaaattcggtagaatacaaatgaaggaacgcattgcaattagttgcggat 526  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40121590 caattaacaaaataataaaggtgttgtagtcaaaggaaaggtgttgtagtcaaatttggtagaatacaaatgaaggaacgcattgcaattagttgcggat 40121689  T
Q  527 gaattgaattaagtagagagtttcggtatagataaattcaaatgtggttccttaattagataacacatggattgttgtgtgtgtttacaaatgctaagat 626  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40121690 gaattgaattaagtagagagtttcggtatggataaattcaaatgtggttccttaattagataacacatggattgttgtgtgtgtttacaaatgctaagat 40121789  T
Q  627 gatgtttcacaataggctcactcatttagatgaaattcacactcacctaaaagaggttgcaattcgacgatgacattgttcttaaagaatgtcgtccaaa 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40121790 gatgtttcacaataggctcactcatttagatgaaattcacactcacctaaaagaggttgcaattcgacgatgacattgttcttaaagaatgtcgtc---- 40121885  T
Q  727 gtaaacaaagtaaggaaagagagacaatcaacatatattgattcattaatcattgat 783  Q
         |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  40121886 -----caaagtaaggaaagagagacaatcaacatatattgattcattatccattgat 40121937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 44782186 - 44782277
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  44782186 tatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattg 44782277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 46679809 - 46679718
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  46679809 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattg 46679718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 33773269 - 33773216
Alignment:
Q  379 atggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||| ||| |||| |||||||| |||||| ||||| |||||||||    
T  33773269 atggaaagatagaatgcataatactctctaggagtcatcactaaaaaacaattg 33773216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 216 - 432
Target Start/End: Original strand, 30634107 - 30634323
Alignment:
Q  216 gtgatattacactttagctatgtcagttttctatttaatttccctgaatgttacgtaataatacattttggctattgtaagtagcataaatttaacaata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30634107 gtgatattacactttagctatgtcagttttctatttaatttccctgaatgttacgtaataatacattttggctattgtaagcagcataaatttaacaata 30634206  T
Q  316 ttgcatgagttagagtatcttctgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtca 415  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||    
T  30634207 ttgcatgagttagagtatcttctgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtca 30634306  T
Q  416 ttactaagaaacaattg 432  Q
    |||||||||||||||||    
T  30634307 ttactaagaaacaattg 30634323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 30633824 - 30633999
Alignment:
Q  8 caactataacaccatgactatccaacggatattttttattatattgtctgagctatgttcatgatatggtaaag-aaaatgacagtaattaaccgaaaag 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30633824 caactataacaccatgactatccaacggatatttattattatattctctaagctatgttcatgatatggtaaagaaaaatgatagtaattaaccgaaaag 30633923  T
Q  107 gtatgcatacgatcgatgagatgcaagaaagaaaaatgagtacagaggtaaggattaaagcaaaagaaagaaaaacac 184  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30633924 gtatgcatacgatcgatgagatgcaagaaagaaaaatgagtac--aggtaaggattaaagcaaaagaaagaaaaacac 30633999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 1175220 - 1175143
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcatta 418  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| | ||||| ||||||||    
T  1175220 tatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcatta 1175143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 1173607 - 1173524
Alignment:
Q  349 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||| ||  |||||| |||||||||||| ||| ||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  1173607 aaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattg 1173524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 35673335 - 35673402
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 408  Q
    |||||| || ||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  35673335 tatgaaatagaggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctcta 35673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 35674858 - 35674915
Alignment:
Q  359 atggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  35674858 atggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcat 35674915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 44687219 - 44687164
Alignment:
Q  377 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||||| ||| |||| |||||||| | |||| |||||||||||||||    
T  44687219 caatggaaagatagaatgcataatgctctctaggaatcatcactaagaaacaattg 44687164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 8081609 - 8081518
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  8081609 tatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattg 8081518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 25725811 - 25725900
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaat 430  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  25725811 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaat 25725900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 40382757 - 40382851
Alignment:
Q  338 tgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    |||||||||| ||||||||  || |||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  40382757 tgatatgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctaggaatcattactaagaaacaattg 40382851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 10410905 - 10410830
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  10410905 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 10410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 25502028 - 25502119
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| | ||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||  ||||||||||||    
T  25502028 tatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattg 25502119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 25506941 - 25507032
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||  |||||||||||| | | ||||||| ||||||||||||    
T  25506941 tatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattg 25507032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 6742649 - 6742582
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 408  Q
    ||||||| ||| ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  6742649 tatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctcta 6742582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 10412474 - 10412411
Alignment:
Q  345 aattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 408  Q
    ||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  10412474 aattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctcta 10412411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 4847691 - 4847782
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||    
T  4847691 tatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattg 4847782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 28395556 - 28395631
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  28395556 tatgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 28395631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 8005974 - 8005918
Alignment:
Q  377 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattga 433  Q
    ||||||||||||||| ||| |||| |||||||| |||||| || |||||||||||||    
T  8005974 caatggaaagatagaatgcataatgctctctaggagtcatcacaaagaaacaattga 8005918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 41874617 - 41874526
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||    
T  41874617 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcattaccaagaaacaattg 41874526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 433
Target Start/End: Complemental strand, 28133827 - 28133735
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattga 433  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| || ||||  |||||||    
T  28133827 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattga 28133735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 27682298 - 27682223
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| ||||||    
T  27682298 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcat 27682223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 341 - 408
Target Start/End: Complemental strand, 4602400 - 4602333
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 408  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||  || |||||||||    
T  4602400 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctcta 4602333  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 433
Target Start/End: Complemental strand, 4609212 - 4609120
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattga 433  Q
    ||||||| ||||||||| || ||||||| ||||||||||| ||||| || ||||  || |||||||||| |||||| || ||||  |||||||    
T  4609212 tatgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattga 4609120  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 35244235 - 35244181
Alignment:
Q  377 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaatt 431  Q
    ||||||||||||||| ||| |||| |||||||| |||||| ||||||||| ||||    
T  35244235 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaaaaatt 35244181  T

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Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 29924729 - 29924647
Alignment:
Q  349 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaatt 431  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  29924729 aaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaaaaaacaatt 29924647  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 21464611 - 21464553
Alignment:
Q  349 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctct 407  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21464611 aaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctct 21464553  T

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Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 1015828 - 1015737
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| | |||| |||| ||||||||||||    
T  1015828 tatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattg 1015737  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 17308794 - 17308703
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  17308794 tatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattg 17308703  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 14007846 - 14007778
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctag 409  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  14007846 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctag 14007778  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 45035267 - 45035187
Alignment:
Q  336 tctgatatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    |||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||  || |||||||||| ||||||    
T  45035267 tctgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcat 45035187  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 30191687 - 30191596
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||| ||||||||| |||||||||| |||||| ||||| |||||||||||   |||||||||||| || ||||||| ||||||||||||    
T  30191687 tatgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctctaaaaatcattaccaagaaacaattg 30191596  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 353 - 432
Target Start/End: Original strand, 33187188 - 33187267
Alignment:
Q  353 gattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||| || ||||||||||||||| ||||||||||||||||| |||||| ||||||  ||||||||| ||||||||||||    
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattg 33187267  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 45033467 - 45033392
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||  ||||| ||||||| ||||||    
T  45033467 tatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcat 45033392  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 41602520 - 41602465
Alignment:
Q  377 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||    
T  41602520 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattg 41602465  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 3372455 - 3372521
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctct 407  Q
    ||||||| ||| ||||| || |||||||||||||| |||||||||||||||||   |||||||||||    
T  3372455 tatgaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctct 3372521  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 25302879 - 25302825
Alignment:
Q  378 aatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    |||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||    
T  25302879 aatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattg 25302825  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 25306875 - 25306820
Alignment:
Q  377 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||||||||| ||| |||| |||||||  |||||| |||||||||||||||    
T  25306875 caatggaaagatagaatgcataatgctctctatgagtcatcactaagaaacaattg 25306820  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 15689141 - 15689072
Alignment:
Q  341 tatgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctaga 410  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  15689141 tatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctaga 15689072  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 34350345 - 34350428
Alignment:
Q  349 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattg 432  Q
    ||||||||| ||||||||||||||||| ||| ||||| |||| ||  |||||||||| ||| ||||||||||||||||||||||    
T  34350345 aaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattg 34350428  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 9373599 - 9373649
Alignment:
Q  366 taggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 416  Q
    |||||||||||||||||||||||||| || |||||| ||| ||| ||||||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcat 9373649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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