View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-15 (Length: 275)
Name: Tnk88-4-LTR4-TNT-insertion-15
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 9087453 - 9087611
Alignment:
| Q |
9 |
ggtccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtatgtgctc |
108 |
Q |
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| T |
9087453 |
ggtccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtatgtgctc |
9087552 |
T |
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| Q |
109 |
ctgccatcctaaactatgcaagatttaatttgctcaacaaaagaaagtggagtgataag |
167 |
Q |
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| T |
9087553 |
ctgccatcctaaagtatgcaagatttaatttgttcaacaaaagaaagtggagtgataag |
9087611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 9126589 - 9126737
Alignment:
| Q |
11 |
tccacaggacaattctgtccactcgtcatgatagctgctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtatgtgctcct |
110 |
Q |
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| T |
9126589 |
tccacaggacaattctgtcgactcgtcatgatagctgctgctattgaaaagctggagattcagaagaatcgatagtataatcatcgtagtatgtgctcct |
9126688 |
T |
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| Q |
111 |
gccatcctaaactatgc-aagatttaatttgctcaacaaaagaaagtgga |
159 |
Q |
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| T |
9126689 |
gccatcctaaagtatgcaaagatttaatttg-ttaacaaaagaaagtgga |
9126737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 9087625 - 9087687
Alignment:
| Q |
195 |
tatgtgctcctttgtaaaaagtgcattgtgctgtggtcgtgatccgtgtgaaaataaaaaata |
257 |
Q |
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| T |
9087625 |
tatgtgctcctttgtaaaaagtacattgtgctgtggtcgtgatccgtgtgaaaataaaaaata |
9087687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 9126760 - 9126825
Alignment:
| Q |
195 |
tatgtgctcctttgtaaaaagtgcattgtgctgtggtcgtgatccgtgtgaaaataaaaaatatggcaatt |
265 |
Q |
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| T |
9126760 |
tatgtgctcctttataaaaagtgcattgtgct-----cgtgatccgtgtaaaaataaaaaatatggcaatt |
9126825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 9106551 - 9106619
Alignment:
| Q |
48 |
ctgctattgataagctggagattcagaagaatcagtagcataatcaaggtagtatgtgctcctgccatc |
116 |
Q |
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| T |
9106551 |
ctgctattgataagcaggagatttagaagattcagtagtgtaatcaaagcaccgtgtgctcctgccatc |
9106619 |
T |
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