View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-16 (Length: 608)
Name: Tnk88-4-LTR4-TNT-insertion-16
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-16 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Complemental strand, 18358971 - 18358389
Alignment:
| Q |
8 |
gagaaaagatggccacccaccagtttatggacatggaggacatagggacatggattgcagccattggtgcctagctggtgttcctgatacttggaatcag |
107 |
Q |
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| T |
18358971 |
gagaaaagatggccacccatcagtttatggacatggaggacatagggacatggattgcagccattggtgcctagctggtgttcctgatacttggaatcag |
18358872 |
T |
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| Q |
108 |
cttttatatgcaagtctaatttaaaattgattaatgcctattctcaaaagagaaaatatatccttagtaaacatgtatattttcatttgtaaaggatgat |
207 |
Q |
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| T |
18358871 |
cttttatatgcaagtctaatttaaaattgattaatgcctattctcaaaagagaaaatatatccttagtaaacatgtatattttcatttgtaaaggatgat |
18358772 |
T |
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| Q |
208 |
ggaataaggtatctcattacataatctaaatgtgatttttatttgatctatatataggatgaaattgctcttatctaatatatttgatcaaattttaggt |
307 |
Q |
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| T |
18358771 |
ggaataaggtatctcattacataatctaaatgtgatttttatttgatctatatataggatgaaattgctcttatctaatatatttgatcaaattttaggt |
18358672 |
T |
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| Q |
308 |
tgaatttac-aaatgttatactcaaaattaaagattatatgagaatctctccacttttttattcacttggaatctcaatctctcttatctaatatatatc |
406 |
Q |
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| T |
18358671 |
tgaatttacaaaatgttatactcaaaattgaagattatatgagaatctctctacttttttattcacttggaatctcaatc-----------aaatatatc |
18358583 |
T |
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| Q |
407 |
accaaaaatttgagaaggcata-ataaaacatgtcttaacact-atagttttatttaccttgttgatgctctgagttcgattaagttatgagaaattata |
504 |
Q |
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| T |
18358582 |
accaaatatttgagaaggcatatctaaaacatgtcttaacactaatagttttatttaccttgttgatgctcttagttcgattaagttatgagaaattata |
18358483 |
T |
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| Q |
505 |
acgagtgatcttcaggcactc-tttaagtttagtacaaataaaaagtaggaattaggttgtaaattaaggctgcatcataaataaatagaaacaa |
598 |
Q |
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| T |
18358482 |
acgagtgatctttgggcactcttttaagtttagtacaaataaaaagta-gaattatgttgtaaattaaggcggcatcataaataaatagaaacaa |
18358389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 15113355 - 15113414
Alignment:
| Q |
60 |
gattgcagccattggtgcctagctggtgttcctgatacttggaatcagcttttatatgca |
119 |
Q |
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| T |
15113355 |
gattgcagccattggtgtctgcctggtgttcctgatacttggaatatgcttttatatgca |
15113414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 50129190 - 50129231
Alignment:
| Q |
63 |
tgcagccattggtgcctagctggtgttcctgatacttggaat |
104 |
Q |
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| T |
50129190 |
tgcagtcattggtgtctagctggtgctcctgatacttggaat |
50129231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 50750203 - 50750159
Alignment:
| Q |
60 |
gattgcagccattggtgcctagctggtgttcctgatacttggaat |
104 |
Q |
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| T |
50750203 |
gattgcagccattggtgcctccctggtgtgcctgatatttggaat |
50750159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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