View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-17 (Length: 328)
Name: Tnk88-4-LTR4-TNT-insertion-17
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-17 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 10308928 - 10309217
Alignment:
| Q |
31 |
cagagttcttaccgtcaatcagtaatgtcgatgttaactcttttaaatggggagatatatggaatgtttcacaaaaacaaacaatggtcatacccattaa |
130 |
Q |
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| T |
10308928 |
cagagttcttaccatcaatcagtaatgtcgatgttaactcttttaaatggggagatatatggaatgtttcacaaaaacaaacaatggtcatacccattaa |
10309027 |
T |
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| Q |
131 |
cagtagaagacaggaagaccaaatatgggccaagcaaagacttcaccacaggcagcggaatagcggcagcttcatcaactaccaacagttcaacttgcga |
230 |
Q |
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| T |
10309028 |
cagtagaagacaggaagaccaaatatgggccaagcaaagacttcaccacaggcagtggaatagcggcagcttcatcaactaccaacagttcaacttgtga |
10309127 |
T |
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| Q |
231 |
gagcttttcatgttcgtgtggcagtatatactg-aaggnnnnnnnnnttaagatgaataacaagtccagaattttattacttgtcaattg |
319 |
Q |
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| T |
10309128 |
gagcttttcatgttcgtgtggcagtatatactgaaaaaaaaaaaaaaataagatgaataaaaagtccagaattttattacttgtcaattg |
10309217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 84 - 265
Target Start/End: Original strand, 38431990 - 38432172
Alignment:
| Q |
84 |
gatatatggaatgtttcacaaaaa-caaacaatggtcatacccattaacagtagaagacaggaagaccaaatatgggccaagcaaagacttcaccacagg |
182 |
Q |
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| T |
38431990 |
gatatatggaaagtttcaccaaaagcaaacaccagtcatacccattaacagtggaagacaggaagaccagatatgggccaagcaaagacttcactgtcgg |
38432089 |
T |
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| Q |
183 |
cagcggaatagcggcagcttcatcaactaccaacagttcaacttgcgagagcttttcatgttcgtgtggcagtatatactgaa |
265 |
Q |
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| T |
38432090 |
cagtggaatagcagctgcttcatcaacaaccaataattcaacttgcgaaagcttttcatgttcgtgtggcagtatatactgaa |
38432172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 11191838 - 11191789
Alignment:
| Q |
189 |
aatagcggcagcttcatcaactaccaacagttcaacttgcgagagctttt |
238 |
Q |
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| T |
11191838 |
aatagcagcagcttcatcaacgaccaataattcaacttgcgagagctttt |
11191789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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