View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-18 (Length: 474)
Name: Tnk88-4-LTR4-TNT-insertion-18
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-18 |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 231 - 465
Target Start/End: Complemental strand, 1447035 - 1446801
Alignment:
| Q |
231 |
tatggtgtttaacaatattttaacttttaacgagttaaattcatcattttcacaaccttccaaaacaataattctatatttatcctcttaacaaatacca |
330 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| | |
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| T |
1447035 |
tatggtgtttaacaatattttaacttttaaatagttaaattcatcattttcacaattttttaaaacaataattctatatttatcctattaacaaatacaa |
1446936 |
T |
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| Q |
331 |
tacgatactctttagcatttctctaacataatgcaatttaaacnnnnnnnatgatcagttatttattaaaaatacaacattttacttactagttaaatag |
430 |
Q |
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| T |
1446935 |
tacaatactctttagcatttctctaacataatgcattttaaactttttttatgatcagttatttattaaaaatacagcattttacttactagttaaatag |
1446836 |
T |
|
| Q |
431 |
taaagtgctattacatactttcaaaatttcaattg |
465 |
Q |
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| T |
1446835 |
taaagtgctattacatactttcaaaatttcaattg |
1446801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 1447258 - 1447100
Alignment:
| Q |
8 |
acgaatatataagcattaattatatgtcggtattgacgagcttttttgggacattgtctaaaaaacaattacgtaaacgttaaaagaaattaaatatttt |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
1447258 |
acgaatatataagcattaattatatgtcggtacagacgagcttttttgggacattgtttagaaaacaattacgtaaacgttaaaagaaattaaatatttt |
1447159 |
T |
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| Q |
108 |
gtttggctaagtaaaaaagttaaggcttatggcnnnnnnnntgtcatggtgtttagtac |
166 |
Q |
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| T |
1447158 |
gtttggcaaagtaaaaaagttaaggcttatggcaaaaaaaatgtcatggtgtttagtac |
1447100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 3015141 - 3015058
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatcatttt-cacaaccttccaaaacaataattctatatttatcctcttaaca |
323 |
Q |
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| T |
3015141 |
aacaatattttaacttttaaaaagttaaattaatcattttacactattttctaacacaatatttctatttttatcatcttaaca |
3015058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 19894833 - 19894872
Alignment:
| Q |
238 |
tttaacaatattttaacttttaacgagttaaattcatcat |
277 |
Q |
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| T |
19894833 |
tttaacaatattttaacttttaaaaagttaaattcatcat |
19894872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 35675281 - 35675199
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatca-ttttcacaaccttccaaaacaataattctatatttatcctcttaac |
322 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||| | | |||| |||||| |||||| |||||| ||||||| |
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| T |
35675281 |
aacaatattttaacttttaaaaagttaaattcatcacttttcactatttcccaatacaatatttctatttttatcgtcttaac |
35675199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 6548548 - 6548587
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatcatttt |
280 |
Q |
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| T |
6548548 |
aacaatattttaacttttaaaaagttaaattcatcatttt |
6548587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 34835879 - 34835921
Alignment:
| Q |
238 |
tttaacaatattttaacttttaacgagttaaattcatcatttt |
280 |
Q |
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| T |
34835879 |
tttaacaatattttaacttttaaaaagttaaattcttcatttt |
34835921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 46478646 - 46478604
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatcattttcac |
283 |
Q |
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| T |
46478646 |
aacaatattttaacttttaaaaagttaaatttatcattttcac |
46478604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 2239600 - 2239639
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatcatttt |
280 |
Q |
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| T |
2239600 |
aacaatattttaacttttaaaaagttaaattcatcatttt |
2239639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 30831633 - 30831675
Alignment:
| Q |
238 |
tttaacaatattttaacttttaacgagttaaattcatcatttt |
280 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| |
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| T |
30831633 |
tttaacaatatttttacttttaaaaagttaaattcatcatttt |
30831675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 34220737 - 34220655
Alignment:
| Q |
241 |
aacaatattttaacttttaacgagttaaattcatca-ttttcacaaccttccaaaacaataattctatatttatcctcttaac |
322 |
Q |
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|||||||||||||||||||| | |||||||||||| ||||||| || | |||| ||| | |||||| |||||||||||||| |
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| T |
34220737 |
aacaatattttaacttttaaaaacttaaattcatcacttttcaccacttcccaatgcaagatttctatttttatcctcttaac |
34220655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 11141 - 11099
Alignment:
| Q |
238 |
tttaacaatattttaacttttaacgagttaaattcatcatttt |
280 |
Q |
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| T |
11141 |
tttaacaatattttaacttttaaaaagttaaattcatcttttt |
11099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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