View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-19 (Length: 599)
Name: Tnk88-4-LTR4-TNT-insertion-19
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-19 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Original strand, 31954886 - 31955466
Alignment:
| Q |
8 |
gtgcacactaggccaacaattatatatgtcgcagtttagctaggatctacatatgatatggaagaatattttataagcatcccaggaagaatttctaacc |
107 |
Q |
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| T |
31954886 |
gtgcacactagaccaacaattatatatgtcgcagtttagctaggatctacatatgatatggaagaatattttgtaagcatcccaggaagaatttctaacc |
31954985 |
T |
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| Q |
108 |
acagcaggccttatgtgatttcttattttatgtggtgcattgatctgtttacactccttcaaggagtctccttaacttagaacagcgtatgggatgcnnn |
207 |
Q |
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| T |
31954986 |
acagcaggccttatgtgatttcctattttatgtggtgcattgatctgtttacactccttcaaggagtctccttaacttagaacagcgtatgggatgcttt |
31955085 |
T |
|
| Q |
208 |
nnnnngtgttgttaacatgttcaacaagtctctctatcttatctcttggagtacacaggacatccattaggcagagaatccatgttcagcattgtgtgga |
307 |
Q |
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| T |
31955086 |
tttttgtgttgttaacatgttcaacaagtctctctatcttatctcttggagtacataggacatccattaggcagagaatccatgttcagcattgtgtgga |
31955185 |
T |
|
| Q |
308 |
aattaacaatgattgccttacttgagacactcaaaataagcatgcttatgccatgtgttggtcaattaattgtacatgagatattttataatgtaacaaa |
407 |
Q |
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| T |
31955186 |
aattaacaatgattgccttacttgagacattcaaaataagcatgcttatgccatgtgttggtcaattaattgtacatgagatattttataatgtaacaaa |
31955285 |
T |
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| Q |
408 |
tgctcttgggcagtttcttagttttgactgtacaatggccataatcataacaggaatttcattcttgacaatctcctcaaaccattgaaattgtttcaga |
507 |
Q |
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| T |
31955286 |
tgctcttgggcagtttcttagtttggactgtacaatggccataatcataacaggaatttcattcttgacaatctcctcaaaccattgaaattgtttcaga |
31955385 |
T |
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| Q |
508 |
tgcttgcaaggcacttatggcatatatcttgagccaatacaaaatgcccttaataagctaaatctttcgatacatctccaa |
588 |
Q |
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| T |
31955386 |
tgcttgcaaggcacttatggcatatatcttgagccaatacaaaatgcccttaataagctaaatctttcgatacatctccaa |
31955466 |
T |
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