View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-2 (Length: 520)
Name: Tnk88-4-LTR4-TNT-insertion-2
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 91 - 270
Target Start/End: Complemental strand, 9423253 - 9423074
Alignment:
| Q |
91 |
ttataactaagatcaagaatgcataggtcgtatccacgactcattgactccctgagtatttttatattgacgtgaacaagttttgagagaggttcaaata |
190 |
Q |
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| T |
9423253 |
ttataactaagataaagaatgcataggtcgtatccatgactcattgactccctgagtatttttctgttgacgtgaacaagttttgagagaggttcaaata |
9423154 |
T |
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| Q |
191 |
tgctgatgaatccactatttcaattttcaagtaaccaattaggaactctttcattaattttgttctgagacaaactcaaa |
270 |
Q |
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| T |
9423153 |
tgctgatgaatccactatttcaattttcaagtaaccaattaggaactctttcattaattttgttcttagacaaacccaaa |
9423074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 305 - 504
Target Start/End: Complemental strand, 9422644 - 9422449
Alignment:
| Q |
305 |
catcaaacactggcactggcgtgcgtttttaggctagtctggttaccactgatggtgtaatagtttattatatatccacaccgatcagaagactttgaaa |
404 |
Q |
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| T |
9422644 |
catcaaacactggcactggcgtgcgtttttaggctactctggttaccacaggtggtgtaattgtttattat----ccacaccgatcagaagactttgaaa |
9422549 |
T |
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| Q |
405 |
tccttcacagatcaaactattcaaacatcagaacagcaagggtggttacatagattttttggatttgattccatatctcgttctttactgatggctgtct |
504 |
Q |
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| T |
9422548 |
tccttcacagatcaaactattcaaacatcagaacagcaagggtggttacatagattttttggatttgatgccatatctcgttcttttctaatggctgtct |
9422449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 42124025 - 42124058
Alignment:
| Q |
155 |
tattgacgtgaacaagttttgagagaggttcaaa |
188 |
Q |
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| T |
42124025 |
tattgacgtgaacaagttttgagagaggttcaaa |
42124058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 34240120 - 34240087
Alignment:
| Q |
155 |
tattgacgtgaacaagttttgagagaggttcaaa |
188 |
Q |
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| T |
34240120 |
tattgatgtgaacaagttttgagagaggttcaaa |
34240087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 8523528 - 8523587
Alignment:
| Q |
48 |
acttgcattgcaaattgtcaaaattatgtcaccagcaagtaagttataactaagatcaag |
107 |
Q |
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| T |
8523528 |
acttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaag |
8523587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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