View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-20 (Length: 320)
Name: Tnk88-4-LTR4-TNT-insertion-20
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-20 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 34704704 - 34704474
Alignment:
| Q |
9 |
aacaaaatcttaggcaacattccaataagtgaaaataaggaaggttgctggaaagataaagctagnnnnnnngtttgaaactgaaaatagtataagactt |
108 |
Q |
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| T |
34704704 |
aacaaaatcttaggcaacattccaataagtgaaaataaggaaggttgctggaaagataaagctagaaaaaaagtttgaaactgaaaatagtataagactt |
34704605 |
T |
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| Q |
109 |
tttgggacgtaaaaatgaatgttcagacttaataggtttcatcaacaagaaaaccatgagaattacggagccatgtctgtgagacacttttgattactag |
208 |
Q |
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| T |
34704604 |
tttgggacgtaaaaatgaatgttcggatttaataggtttcaccaacaagaaaaccatgagaa-tccgtagccatgtttgtgagacacttttgattactag |
34704506 |
T |
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| Q |
209 |
agatagagtgaatgatgcaatagtgaacatat |
240 |
Q |
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| T |
34704505 |
agattgagtgaatgatgcaatagtgaatatat |
34704474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 34704467 - 34704438
Alignment:
| Q |
279 |
taggatttagagtgtcgttataatgatgaa |
308 |
Q |
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| T |
34704467 |
taggatttagagtgtcgttataatgatgaa |
34704438 |
T |
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