View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-21 (Length: 148)
Name: Tnk88-4-LTR4-TNT-insertion-21
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-21 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 48872924 - 48872792
Alignment:
| Q |
6 |
caccagaggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaaga |
105 |
Q |
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| T |
48872924 |
caccagaggaggaacacacaccaagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaaga |
48872825 |
T |
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| Q |
106 |
gtatatttttctcatttacacaaattataatta |
138 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48872824 |
gtatatttttctcatttacacaaattataatta |
48872792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 48878228 - 48878096
Alignment:
| Q |
6 |
caccagaggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaaga |
105 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
48878228 |
caccagaggaggaacacacaccaagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaaga |
48878129 |
T |
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| Q |
106 |
gtatatttttctcatttacacaaattataatta |
138 |
Q |
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| T |
48878128 |
gtatatttttctcatttacacaaattataatta |
48878096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 48865859 - 48865737
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatat |
111 |
Q |
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| T |
48865859 |
aggaggaacacacgtcaaaataacttcacaacacacaaagtatgtataaaagaaacacaaatcaaacaa-ctatatatgaatccaagtacaggagtataa |
48865761 |
T |
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| Q |
112 |
ttttctcatttacacaaattataa |
135 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
48865760 |
ttttctcatttacacaaattataa |
48865737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 48842591 - 48842674
Alignment:
| Q |
6 |
caccagaggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatat |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||||||| | || ||||||| || |||||||||| ||||||| |
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| T |
48842591 |
caccagaggaggaacacacatcaagataacttcacaacacacagaatacggatgaaagaaagacaaatcaaacaagttatatat |
48842674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45354031 - 45354111
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa |
92 |
Q |
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| T |
45354031 |
aggaggatcacacgccaaaataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa |
45354111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45356592 - 45356672
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa |
92 |
Q |
| |
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||||||| ||||| ||| ||||||||||| | ||||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
45356592 |
aggaggatcacacgccaaaataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa |
45356672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45363510 - 45363590
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa |
92 |
Q |
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| T |
45363510 |
aggaggatcacacgccaaaataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa |
45363590 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45370333 - 45370413
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa |
92 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| | ||||||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
45370333 |
aggaggatcacacgccaaaataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa |
45370413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45382329 - 45382409
Alignment:
| Q |
12 |
aggaggaacacacatcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa |
92 |
Q |
| |
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| T |
45382329 |
aggaggatcacacgccaaaataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa |
45382409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 48856345 - 48856253
Alignment:
| Q |
37 |
tcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacacaaa |
129 |
Q |
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|
||||| || ||||||||| |||||||||||||| |||||||||| ||||||| || |||||| | || |||| |||||||||||| ||||| |
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| T |
48856345 |
tcacaacacacagaatatatataaaagaaacacaaatcaaacaagctatatacaaagccaagcataggaatataattttctcatttatacaaa |
48856253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 48900106 - 48900010
Alignment:
| Q |
33 |
aacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtat-atttttctcatttacacaa |
128 |
Q |
| |
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||||||||| || || |||||||||||||||||||| ||||||||| ||||| ||||| | |||| | |||||| |||||| ||||||| |||| |
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| T |
48900106 |
aacttcacaacacacgaaatatgtataaaagaaacacagatcaaacaagctatacatgaagccgagcataggagtataatttttatcatttatacaa |
48900010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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