View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-4-LTR4-TNT-insertion-4 (Length: 342)

Name: Tnk88-4-LTR4-TNT-insertion-4
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-4-LTR4-TNT-insertion-4
Tnk88-4-LTR4-TNT-insertion-4
[»] chr1 (1 HSPs)
chr1 (8-333)||(26955494-26955819)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 26955819 - 26955494
Alignment:
Q  8 tacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaaatttgtatggatcgagattattccttgtatgggaatttatgtacgatgtttctgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26955819 tacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaattttgtatggatcaagattattccttgtatgggaatttatgtacgatgtttctgt 26955720  T
Q  108 ggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttgatttttgccccttgttactagtgcttgttgga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26955719 ggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtggttagtactacttgatttttgccccttgttactagttcttgttgga 26955620  T
Q  208 tttgaattttatcgtatcaatttgattaattttctcatttatagaggtattcatataaaatcaataattgataacatgtaaacatgtaaaattaaatctt 307  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26955619 tttgaattttatcgtatcatgttgattaattttctcatttatagaggtattcatataaaatcaataattgataacatgtaaacatgtaaaattaaatctt 26955520  T
Q  308 gaatgtgttaaaaatattagcaattg 333  Q
    ||||||||||||||||||||||||||    
T  26955519 gaatgtgttaaaaatattagcaattg 26955494  T

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