View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-5 (Length: 232)
Name: Tnk88-4-LTR4-TNT-insertion-5
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 53792160 - 53792076
Alignment:
| Q |
138 |
cacactttgtaatgaatgacctcaacaatggtagaagcatgacaactattgaagggaactgatgattttgcaggaaaagtgaatt |
222 |
Q |
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| T |
53792160 |
cacactttgtaatgaatgacctcaacaatggtagaagcatgacaactattgaagggaactgatgattttgcaggaaaagtgaatt |
53792076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 53792299 - 53792239
Alignment:
| Q |
8 |
gtgcaccctctgatgtgcctccaaaataggcaaccaaaaaatgacccttcccaacctagtg |
68 |
Q |
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| T |
53792299 |
gtgcaccctctgatgtgcctccaaaataggcaaccaaaaaatgacccttcccaacctagtg |
53792239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 53783006 - 53782963
Alignment:
| Q |
156 |
acctcaacaatggtagaagcatgacaactattgaagggaactga |
199 |
Q |
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| T |
53783006 |
acctcgacaatggtagaagcatgacaattattgaagggagctga |
53782963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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