View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-4-LTR4-TNT-insertion-6 (Length: 635)

Name: Tnk88-4-LTR4-TNT-insertion-6
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-4-LTR4-TNT-insertion-6
Tnk88-4-LTR4-TNT-insertion-6
[»] chr2 (3 HSPs)
chr2 (8-625)||(37844412-37845030)
chr2 (442-483)||(33197360-33197401)
chr2 (436-488)||(28803621-28803673)
[»] chr7 (2 HSPs)
chr7 (430-488)||(1431417-1431475)
chr7 (442-486)||(27481415-27481459)
[»] chr5 (2 HSPs)
chr5 (442-488)||(20982256-20982302)
chr5 (436-488)||(6739775-6739827)
[»] chr4 (2 HSPs)
chr4 (436-490)||(24936212-24936265)
chr4 (435-483)||(24193493-24193541)
[»] chr3 (1 HSPs)
chr3 (442-484)||(29094288-29094330)
[»] chr1 (1 HSPs)
chr1 (443-488)||(24263261-24263306)
[»] chr8 (2 HSPs)
chr8 (456-488)||(6950239-6950271)
chr8 (442-482)||(31875680-31875720)


Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 37844412 - 37845030
Alignment:
Q  8 ctaattcatgtatcttacttttcatatagtcatgcatctttactttgctatcttgtctcattagcatcaaaggctataacatattgtataagtttgatgt 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844412 ctaattcatgtatcttacttttcatatagtcatgcatcttcactttgctatcttgtctcattagcatcaaaggctataacatattgtataagtttgatgt 37844511  T
Q  108 atcaaagaagaaaactattagtagtctaccatattgctaattatatgttgcatttgctatccaaaagttttatgattcttcaaactcagttccttcgtct 207  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844512 atcaaagaagaaaactat--gtagtctaccatattgctaattatatgttgcatttgctatccaaaagttttatgattcttcaaactcagttccttcgtct 37844609  T
Q  208 accaaattattaaccagtctcggaaaacaattacagctcaggttcttccactggtggtaccgtagcaaaggatgccgttggcaatgatgtggttgcagca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844610 accaaattattaaccagtctcggaaaacaattacagctcaggttcttccactggtggtaccgtagcaaaggatgccgttggcaatgatgtggttgcagca 37844709  T
Q  308 gaatggctaaagtcacatggacccggtgaccgtactcttacacaaggattaaaggtaagtgttcaattgcaaactggttagtgtgtctcc---ataagtc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  37844710 gaatggctaaagtcacatggacccggtgaccgtactcttacacaaggattaaaggtaagtgttcaattgcaaactggttagtgtgtctccattataagtc 37844809  T
Q  405 gttttcattagctactctagagagcttatgaaaatgacttatagataaacacttatatgataagcttttatgctataagcacttcagatactgtttggaa 504  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  37844810 gttttcattagctattctagagagcttatgaaaatgacttatagataaacacttatatgataagcttttatgctataagcacttaagatactgtttgaaa 37844909  T
Q  505 gagtgaaataaattccttctcaagcttccaccataataactactttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacagaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37844910 gagtgaaataaattccttctcaagcttccaccataataactactttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacagaa 37845009  T
Q  605 cacttgcaacatttgcaatta 625  Q
    |||||||||||||||||||||    
T  37845010 cacttgcaacatttgcaatta 37845030  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 33197360 - 33197401
Alignment:
Q  442 cttatagataaacacttatatgataagcttttatgctataag 483  Q
    ||||||||||| |||||||||||||||| |||||| ||||||    
T  33197360 cttatagataagcacttatatgataagcgtttatgttataag 33197401  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 488
Target Start/End: Original strand, 28803621 - 28803673
Alignment:
Q  436 aaatgacttatagataaacacttatatgataagcttttatgctataagcactt 488  Q
    |||| ||||||| |||| |||||||||||||||| ||||||| |||| |||||    
T  28803621 aaataacttatatataagcacttatatgataagcatttatgccataaacactt 28803673  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 1431417 - 1431475
Alignment:
Q  430 ttatgaaaatgacttatagataaacacttatatgataagcttttatgctataagcactt 488  Q
    ||||| |||| ||||||| |||||||||||||||||||||  |||||||||||| ||||    
T  1431417 ttatggaaataacttatacataaacacttatatgataagcacttatgctataagaactt 1431475  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 27481415 - 27481459
Alignment:
Q  442 cttatagataaacacttatatgataagcttttatgctataagcac 486  Q
    |||||| |||||||||||||| |||| | ||||||||||||||||    
T  27481415 cttatacataaacacttatataataaacatttatgctataagcac 27481459  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 20982256 - 20982302
Alignment:
Q  442 cttatagataaacacttatatgataagcttttatgctataagcactt 488  Q
    |||||| |||| ||||||||||||||||  |||||||||||||||||    
T  20982256 cttatacataagcacttatatgataagcacttatgctataagcactt 20982302  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 6739827 - 6739775
Alignment:
Q  436 aaatgacttatagataaacacttatatgataagcttttatgctataagcactt 488  Q
    |||||||||||| |||||| |||||||||||| |  ||||| |||||||||||    
T  6739827 aaatgacttatacataaacgcttatatgataaacgcttatgatataagcactt 6739775  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 24936265 - 24936212
Alignment:
Q  436 aaatgacttatagataaacacttatatgataagcttttatgctataagcacttca 490  Q
    |||| ||||||| |||| ||||||||| |||||| ||||||||||||||||||||    
T  24936265 aaataacttatacataaccacttatat-ataagcctttatgctataagcacttca 24936212  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 24193541 - 24193493
Alignment:
Q  435 aaaatgacttatagataaacacttatatgataagcttttatgctataag 483  Q
    ||||| ||||||| ||||  ||||||||||||||| |||||||||||||    
T  24193541 aaaataacttatacataagtacttatatgataagcgtttatgctataag 24193493  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 29094330 - 29094288
Alignment:
Q  442 cttatagataaacacttatatgataagcttttatgctataagc 484  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  29094330 cttatacataaacacttatatgataagtgtttatgctataagc 29094288  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 24263261 - 24263306
Alignment:
Q  443 ttatagataaacacttatatgataagcttttatgctataagcactt 488  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  24263261 ttatacataaacacttatatgctaaacgtttatgctataagcactt 24263306  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 6950271 - 6950239
Alignment:
Q  456 cttatatgataagcttttatgctataagcactt 488  Q
    |||||||||||||| ||||||||||||||||||    
T  6950271 cttatatgataagcgtttatgctataagcactt 6950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 482
Target Start/End: Original strand, 31875680 - 31875720
Alignment:
Q  442 cttatagataaacacttatatgataagcttttatgctataa 482  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  31875680 cttatagataagcacttatatgataagcgcttatgctataa 31875720  T

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