View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-4-LTR4-TNT-insertion-7 (Length: 310)
Name: Tnk88-4-LTR4-TNT-insertion-7
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-4-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 23851785 - 23852081
Alignment:
| Q |
8 |
cattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttgaatgaattttaag |
107 |
Q |
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| T |
23851785 |
cattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggcccatggaaaaaacttgaatgaattttaag |
23851884 |
T |
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| Q |
108 |
gattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaatccattgcatctc |
207 |
Q |
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| T |
23851885 |
gattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaatccattgcatctc |
23851984 |
T |
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| Q |
208 |
gtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttcctaaaacaattggta |
304 |
Q |
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| T |
23851985 |
gtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttcctaaaacaattggta |
23852081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 22618477 - 22618761
Alignment:
| Q |
8 |
cattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttgaatgaattttaag |
107 |
Q |
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| T |
22618477 |
cattcaagtaattgttaccaagggttaaatatttcaaatttgacaattttcccaaaatatttggaataggaccatggaaaaaacttgattgaagtgtgag |
22618576 |
T |
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| Q |
108 |
gattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaatccattgcatctc |
207 |
Q |
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| T |
22618577 |
gtttaccatattttcaagttgccccaaccatgtcggcagttgattattgaaattgttgttggtcatgtcaagttcctctaaaccagatccatttcatctt |
22618676 |
T |
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| Q |
208 |
gtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttccta |
292 |
Q |
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| T |
22618677 |
gcagattgtaaattaccgatgagtgcatctccttgaagtcggtttccagacaaatctagtgacagaagctgacacatatttccta |
22618761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 23751084 - 23751368
Alignment:
| Q |
8 |
cattcaagtgattgttagcaaggattaaatatttcaagtttgacaattttcccaaaaaatttggaataggaccatggaaaaaacttgaatgaattttaag |
107 |
Q |
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||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | | || |
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| T |
23751084 |
cattcaagtaattgttaccaagggttaaatatttcaaatttgacaattttcccaaaatatttggaataggaccatggaaaaaacttgattgaagtgtgag |
23751183 |
T |
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| Q |
108 |
gattaccagattttcaagctgccccaaccatgttggcagctgatcattgaatttgttgttggtcaaatccagttccagcaaatcaaatccattgcatctc |
207 |
Q |
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| T |
23751184 |
gtttaccatattttcaagttgccccaaccatgtcggcagttgattattgaaattgttgttggtcatgtcaagttcctctaaaccagatccatttcatctt |
23751283 |
T |
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| Q |
208 |
gtagaatttaagttgccaacaagtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttccta |
292 |
Q |
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| T |
23751284 |
gcagattgtaaattaccgatgagtgcatctccttgaagtcggtttccagacaaatctagtgacagaagctgacacatatttccta |
23751368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 20573474 - 20573411
Alignment:
| Q |
229 |
agtgcgtctccttgaagtccgtttccagacaaatctattgacagaagatgacacatatttccta |
292 |
Q |
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||||| ||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
20573474 |
agtgcatctccttcaagtctgtttccagacaaatctagtgacagaagctgacacatatttccta |
20573411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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