View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-4-LTR4-TNT-insertion-9 (Length: 767)

Name: Tnk88-4-LTR4-TNT-insertion-9
Description: Tnk88-4-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-4-LTR4-TNT-insertion-9
Tnk88-4-LTR4-TNT-insertion-9
[»] chr3 (12 HSPs)
chr3 (586-694)||(4603354-4603462)
chr3 (699-752)||(10018777-10018830)
chr3 (699-752)||(10179974-10180027)
chr3 (699-752)||(10661756-10661809)
chr3 (699-752)||(782838-782891)
chr3 (699-752)||(10123317-10123370)
chr3 (699-748)||(10256091-10256140)
chr3 (699-752)||(10514351-10514404)
chr3 (698-752)||(10613345-10613399)
chr3 (699-752)||(10511027-10511079)
chr3 (699-752)||(19954451-19954504)
chr3 (100-215)||(46438394-46438509)
[»] chr8 (3 HSPs)
chr8 (699-758)||(7277749-7277808)
chr8 (699-758)||(7275144-7275203)
chr8 (699-742)||(13856766-13856809)
[»] chr5 (4 HSPs)
chr5 (699-758)||(26873161-26873220)
chr5 (698-758)||(21256699-21256759)
chr5 (699-758)||(21254227-21254286)
chr5 (699-740)||(43233922-43233963)
[»] chr4 (4 HSPs)
chr4 (97-228)||(11985558-11985688)
chr4 (698-752)||(2547105-2547159)
chr4 (699-752)||(35783806-35783859)
chr4 (699-752)||(5444805-5444859)
[»] chr2 (5 HSPs)
chr2 (699-758)||(31269463-31269522)
chr2 (699-758)||(31180296-31180355)
chr2 (699-758)||(24038342-24038401)
chr2 (699-758)||(24039537-24039596)
chr2 (156-215)||(28510741-28510800)
[»] chr7 (3 HSPs)
chr7 (698-758)||(8083388-8083448)
chr7 (699-758)||(41830279-41830338)
chr7 (699-758)||(41832685-41832744)
[»] scaffold0862 (1 HSPs)
scaffold0862 (699-758)||(301-360)
[»] scaffold0525 (1 HSPs)
scaffold0525 (699-758)||(2028-2087)
[»] chr6 (5 HSPs)
chr6 (699-758)||(8655827-8655886)
chr6 (699-758)||(30689634-30689693)
chr6 (699-752)||(6825508-6825561)
chr6 (699-752)||(24249805-24249858)
chr6 (699-752)||(6823035-6823088)
[»] chr1 (1 HSPs)
chr1 (699-758)||(18705708-18705767)
[»] scaffold0023 (1 HSPs)
scaffold0023 (699-752)||(111544-111597)
[»] scaffold0001 (1 HSPs)
scaffold0001 (698-752)||(144660-144714)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 586 - 694
Target Start/End: Original strand, 4603354 - 4603462
Alignment:
Q  586 agttttacttgaagatagctttgagattgaaatgtgtgggattggaaacatattcacctcttgtgattcctaacttcatctctgaattttgaatggactt 685  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  4603354 agttttactttaagatagctttgagattgaaaagtgagggattggaaacatattcatctcttgtgattcctaacttcatttctgaattttgaatggactt 4603453  T
Q  686 ttatggtga 694  Q
     ||||||||    
T  4603454 ctatggtga 4603462  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10018777 - 10018830
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactcttt 10018830  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10179974 - 10180027
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactcttt 10180027  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10661756 - 10661809
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactcttt 10661809  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 782838 - 782891
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactcttt 782891  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10123317 - 10123370
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactcttt 10123370  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 748
Target Start/End: Original strand, 10256091 - 10256140
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaact 748  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaact 10256140  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10514351 - 10514404
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  10514351 tgttaggaatcatggcatccatggaaagaaggagagaaaactaataaactcttt 10514404  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 752
Target Start/End: Original strand, 10613345 - 10613399
Alignment:
Q  698 gtgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||| |||| |||||||||||| ||||||| ||||||||||||| |||||||||    
T  10613345 gtgttgggaatcatgacatccatagaaagaatgagagaaaactaacaaactcttt 10613399  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 10511027 - 10511079
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| |||| |||||||||| ||||||||||||| |||||||||    
T  10511027 tgttaggaaacatg-catctatggaaagaatgagagaaaactaacaaactcttt 10511079  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 19954451 - 19954504
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||| |||||||||||||||||||| |||||||||||| |||| || ||||||    
T  19954451 tgttatgaaacatgacatccatggaaggaaggagagaaatctaacaatctcttt 19954504  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 46438509 - 46438394
Alignment:
Q  100 agtggaagcataagtctttggaagatgtcacatgggaagacaataatatgttgaaaggacaatttcctgaatttagccttgaggacaaggatgttttcaa 199  Q
    ||||||||||||||||| | || ||||| || ||||||||  || || | |||   || || ||||| ||||||| ||||||||||||||||||||| ||    
T  46438509 agtggaagcataagtctgtagatgatgtgacttgggaagatgatgatgtcttgcgtggccagtttccagaatttatccttgaggacaaggatgttttgaa 46438410  T
Q  200 ggaggggggaattgat 215  Q
    ||| || || ||||||    
T  46438409 ggaaggaggtattgat 46438394  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 7277749 - 7277808
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  7277749 tgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactctttctattg 7277808  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 7275144 - 7275203
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||    
T  7275144 tgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattg 7275203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 742
Target Start/End: Complemental strand, 13856809 - 13856766
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaa 742  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  13856809 tgttatgaaacatgacatccatggaaagaaggagagaaaactaa 13856766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 26873161 - 26873220
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattg 26873220  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 698 - 758
Target Start/End: Complemental strand, 21256759 - 21256699
Alignment:
Q  698 gtgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  21256759 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattg 21256699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 21254286 - 21254227
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattg 21254227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Complemental strand, 43233963 - 43233922
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaact 740  Q
    |||||||||||||| ||||||||||| ||| |||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaact 43233922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 11985558 - 11985688
Alignment:
Q  97 tcaagtggaagcataagtctttggaagatgtcacatgggaagacaataatatgttgaaaggacaatttcctgaatttagccttgaggacaaggatgtttt 196  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||||| |  || |||| || || |||| ||| ||||||||||||||||||| |||| |    
T  11985558 tcaaatggaagcataagtcagtagaagatgtcacatgggaggacaatgagttgctgaagggccagtttcttgactttagccttgaggacaaggttgttct 11985657  T
Q  197 caaggaggggggaattgatggaaacatgacta 228  Q
     |||||||| ||||||||| | ||||||||||    
T  11985658 taaggagggtggaattgatag-aacatgacta 11985688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 698 - 752
Target Start/End: Complemental strand, 2547159 - 2547105
Alignment:
Q  698 gtgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  2547159 gtgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactcttt 2547105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Complemental strand, 35783859 - 35783806
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||| |||||||| |||||||||||||||||||  |||||||| |||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactcttt 35783806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 752
Target Start/End: Complemental strand, 5444859 - 5444805
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagag-aaaactaagaaactcttt 752  Q
    |||||||||||||| |||| |||||||||||||| | |||||||| |||||||||    
T  5444859 tgttaggaaacatggcatctatggaaagaaggagggaaaaactaacaaactcttt 5444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 31269463 - 31269522
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattg 31269522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 31180355 - 31180296
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattg 31180296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 24038401 - 24038342
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||| ||||||| ||||||||||| ||| ||||||||||||||||||| |||| ||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattg 24038342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 24039596 - 24039537
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||| ||||||| ||||||||||| ||| ||||||||||||||||||| |||| ||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattg 24039537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 28510800 - 28510741
Alignment:
Q  156 ggacaatttcctgaatttagccttgaggacaaggatgttttcaaggaggggggaattgat 215  Q
    |||||||||||||| ||||| ||||||||||||  |||||  ||||||| ||||||||||    
T  28510800 ggacaatttcctgattttagtcttgaggacaagactgtttctaaggaggagggaattgat 28510741  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 698 - 758
Target Start/End: Original strand, 8083388 - 8083448
Alignment:
Q  698 gtgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  8083388 gtgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattg 8083448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 41830338 - 41830279
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactctttctattg 41830279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 41832744 - 41832685
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattg 41832685  T

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Target: scaffold0862 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Complemental strand, 360 - 301
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattg 301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 2028 - 2087
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattg 2087  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 8655827 - 8655886
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctattg 8655886  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 30689634 - 30689693
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||||||||||| |||||||| || ||| |||||||||||||||||||||||| ||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattg 30689693  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 6825508 - 6825561
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| ||||||||||| |||||||| ||| |||| |||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaactcttt 6825561  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Complemental strand, 24249858 - 24249805
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||| |||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactcttt 24249805  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 6823035 - 6823088
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||| ||||||||||| ||||||| |||||||| ||| |||| |||||||||    
T  6823035 tgttagaaaacatgacattcatggaaggaaggagataaatctaacaaactcttt 6823088  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 699 - 758
Target Start/End: Original strand, 18705708 - 18705767
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactctttcaattg 758  Q
    |||||| ||||||| |||||||| || |||||||||||||||||||||||||||| ||||    
T  18705708 tgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattg 18705767  T

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Target: scaffold0023 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 111544 - 111597
Alignment:
Q  699 tgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    |||||||||||||| ||||||||||| ||||||||||||  ||| |||||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactcttt 111597  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 752
Target Start/End: Original strand, 144660 - 144714
Alignment:
Q  698 gtgttaggaaacatgacatccatggaaagaaggagagaaaactaagaaactcttt 752  Q
    ||||||||||||||| |||| |||||| |||||||| ||| |||| |||||||||    
T  144660 gtgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactcttt 144714  T

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