View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-40-LTR4-TNT-insertion-10 (Length: 415)
Name: Tnk88-40-LTR4-TNT-insertion-10
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-40-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 12338806 - 12339203
Alignment:
| Q |
8 |
gttccacctttgacattgcctccttcggagccaaatacatgaaaaactgagggcaaatatgtgactttatagctctacacgcctcagtaaaatcatttac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12338806 |
gttccacctttgacattgcctccttcggagccaaatacatgaaaaactgagggcaaatatgtgactttatagctctacacgcctcagtaaaatcatttac |
12338905 |
T |
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| Q |
108 |
ctcttttgaaactcgagggtcaaaggaaacgggtgatttagccttaactaacatatcattgatgagtatgaaatggcgcatctcagaccaagctaacaca |
207 |
Q |
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| T |
12338906 |
ctcttttgaaactcgagggtcaaagaaaacaggtgatttagccttaactaacatatcattgatgagtatgaaatggcgcatctcagaccaagctaacaca |
12339005 |
T |
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| Q |
208 |
ttatacaaatattgacacacaacaccaatttcttcatcagtttcaaccgaatggatacctttcttcatgataaatctaattgtatcttgacataatcttg |
307 |
Q |
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| T |
12339006 |
ttatacaaatattgacacacaacaccaatttcttcatcagtttcaaccgaatgaatacctttcttcatgataaatctaattgtatcttgacataatcttg |
12339105 |
T |
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| Q |
308 |
aactaccaccaagattagttctaattgcatttgcactcttgaaatcaaatggaaaatccaaatcagcatcatatccaattatctctttcaacttatta |
405 |
Q |
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| T |
12339106 |
aactaccaccaagattagttctaattgcatttgcactcttgaaatcaaatggaaaatccaaatcagcatcatatccaattatctctttcaactcatta |
12339203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 12392675 - 12393065
Alignment:
| Q |
8 |
gttccacctttgacattgcctccttcggagccaaatacatgaaaaactgagggcaaatatgtgactttatagctctacacgcctcagtaaaatcatttac |
107 |
Q |
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| T |
12392675 |
gttccacctttgacaatgccaccttagaagccacacacatgaaaaactgagggcaaatatgagacgtgatagcattacaggcctcagtataattttccaa |
12392774 |
T |
|
| Q |
108 |
ctcttttgaaactcgagggtcaaaggaaacgggtgatttagccttaactaacatatcattgatgagtatgaaatggcgcatctcagaccaagctaacaca |
207 |
Q |
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| T |
12392775 |
ctcttgtgaaatactaaaatgaaagaagacaggtgattgaggcttaaccaacaaatcattgataagtgtgaaatgatgcatgtcggtccaagataactca |
12392874 |
T |
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| Q |
208 |
ttatacaaatattgacacacaacaccaatttcttcatcagtttcaaccgaatggatacctttcttcatgataaatctaattgtatcttgacataatcttg |
307 |
Q |
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| T |
12392875 |
ttacacaaatattgatacacaacaccaagttcttgatctctttcaaccgaatcattacttttcttcataataaatcttattgcatcttgacataatcttg |
12392974 |
T |
|
| Q |
308 |
aactaccaccaagattagttctaattgcatttgcactcttgaaatcaaatggaaaatccaaatcagcatcatatccaattatctctttcaa |
398 |
Q |
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||| | ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12392975 |
aacaagaaccaagattagccctaattgcagttgctctcttgaaatcaaatggaaaatccaaatcagcatcatacccaattatctctttcaa |
12393065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 12347313 - 12347383
Alignment:
| Q |
8 |
gttccacctttgacattgcctccttcggagccaaatacatgaaaaactgagggcaaatatgtgactttata |
78 |
Q |
| |
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||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
12347313 |
gttccactttcgacatcgcctccttgggagccaaatacatgaaaaaacgagggcaaatatgtgattttata |
12347383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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