View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-40-LTR4-TNT-insertion-11 (Length: 210)
Name: Tnk88-40-LTR4-TNT-insertion-11
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-40-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 4792698 - 4792505
Alignment:
| Q |
7 |
agttagttttgttagaaacaccggttacatgcgtatctagcagaagaagaaagttgaacacacctttaaattgattggcaagttggtgagttatgatact |
106 |
Q |
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| T |
4792698 |
agttagttttgttagaaacaccgattacatgcgtatcttgcagaagaagaaagttgaacacaactttaaattgattggcaagttggtgagttatgatact |
4792599 |
T |
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| Q |
107 |
gaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaatta |
200 |
Q |
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| T |
4792598 |
gaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgctttggcctcctgtcaatgaaatta |
4792505 |
T |
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