View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Tnk88-40-LTR4-TNT-insertion-12 (Length: 764)

Name: Tnk88-40-LTR4-TNT-insertion-12
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Tnk88-40-LTR4-TNT-insertion-12
Tnk88-40-LTR4-TNT-insertion-12
[»] chr5 (3 HSPs)
chr5 (9-754)||(18345656-18346396)
chr5 (557-685)||(29815278-29815405)
chr5 (561-628)||(35732285-35732352)
[»] chr7 (8 HSPs)
chr7 (547-686)||(38603033-38603172)
chr7 (547-686)||(37757418-37757557)
chr7 (547-686)||(37763166-37763305)
chr7 (557-703)||(30969761-30969907)
chr7 (568-706)||(28984141-28984280)
chr7 (547-636)||(25583989-25584078)
chr7 (632-713)||(19267355-19267436)
chr7 (547-583)||(28984289-28984325)
[»] chr1 (7 HSPs)
chr1 (571-713)||(51672458-51672599)
chr1 (557-696)||(18280400-18280539)
chr1 (547-713)||(8296178-8296342)
chr1 (547-634)||(44971010-44971097)
chr1 (547-588)||(32408011-32408052)
chr1 (545-594)||(36554144-36554193)
chr1 (547-636)||(50332580-50332669)
[»] chr4 (4 HSPs)
chr4 (559-713)||(29391161-29391312)
chr4 (571-702)||(31389124-31389254)
chr4 (548-701)||(23499340-23499493)
chr4 (550-620)||(9521817-9521887)
[»] chr8 (5 HSPs)
chr8 (561-727)||(13866174-13866342)
chr8 (547-701)||(39421524-39421678)
chr8 (548-625)||(12034285-12034362)
chr8 (548-696)||(12055910-12056058)
chr8 (567-651)||(35229470-35229555)
[»] chr6 (2 HSPs)
chr6 (568-722)||(14518610-14518762)
chr6 (569-707)||(9611725-9611862)
[»] chr3 (2 HSPs)
chr3 (548-686)||(41417172-41417310)
chr3 (550-590)||(26868934-26868974)
[»] scaffold0352 (1 HSPs)
scaffold0352 (599-686)||(14106-14193)


Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 9 - 754
Target Start/End: Complemental strand, 18346396 - 18345656
Alignment:
Q  9 ctgagacatgtttgctttgtttgttagttagtttatcttcgtctgtattgttgcgtatccgatgttttattatctatatagattagaaaatcctaattct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18346396 ctgagacatgtttgctttgtttgttagttagtttatcttcgtctgtattgttgcgtatccgatgttttattatctatatagatttgaaaatcctaattct 18346297  T
Q  109 ttattttcagcactccaattctttttctcctcattttcatcttcttttgaaggcttgatttatgttaattgatctttaaattttgctctatttaggtcgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18346296 ttattttcagcactccaattctttttctcctcattttcatcatcttttgaaggcttgatttatgttaattgatctttaaattttgctctatttaggtcgg 18346197  T
Q  209 ggaggttataccattaagtgatgcttcggtcgatgcagttgttggaacacttgtattgtgttctgttaaagatgttgatctgacactgaaaggtgatgaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18346196 ggaggttataccattaagtgatgcttcggtcgatgcagttgttggaacacttgtattgtgttctgttaaagatgttgatctgacactgaaaggtgatgaa 18346097  T
Q  309 actttagacttctgtttttctttaaaggtgataaaattataaatagtttgtttctttcctccaaaaattgcttcctcaaattaacaatcatgatgtattt 408  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18346096 actttagacttctgtttttcttcaaaggtgataaaattataaatagtttgtttctttcctccaaaaattgcttcctcaaattaacaatcatgatatattt 18345997  T
Q  409 atttgcaccttacactatataatgatgcattgagtttaaattttaaacaactagaaatgtagttaccaatctaagggagcatgcatataaagagactaca 508  Q
    |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||     |    
T  18345996 atttgcacattaaactatataatgctgcattgagtttaaattttaaacaactagaaatgtagtaactaatctaagggagcatgcatataaagag-----a 18345902  T
Q  509 tatgtgcttcatagtatatgatgaatgnnnnnnnatacggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccat 608  Q
    |||||||||| ||||||||||||||||       ||||||||||||| ||||||||| |||||| |||||||||||||||||||||  |||||| ||| |    
T  18345901 tatgtgcttcctagtatatgatgaatgtttttttatacggatccggctcctctaaagtgagcaattcactttagagtgtaaagtgggcaatatcaaccgt 18345802  T
Q  609 taattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgttacaacaacaacccttgatttacgcactttatactttactcat 708  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||  ||||||||||||| ||| ||||||||||||||| || |||||||||||||||||     
T  18345801 taattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgttgcaataacaacccttgattttcgtactttatactttactcac 18345702  T
Q  709 tttagtgaatcctttccctttttatattgtatcacactttggaatt 754  Q
    |||||   ||||||  | |||||||||||| |||||||||||||||    
T  18345701 tttagacgatccttgtcatttttatattgtctcacactttggaatt 18345656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 557 - 685
Target Start/End: Original strand, 29815278 - 29815405
Alignment:
Q  557 cctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttca 656  Q
    |||||| |||||| || | ||||||  ||||||||||   | |||| ||||||||||||||||| ||||||| ||||||| ||||||| ||| |   |||    
T  29815278 cctctatagcgagtaattaactttatcgtgtaaagtgagtactatcaaccattaattaataaatcaaaggtagatattgtaggtacatcatagc-catca 29815376  T
Q  657 tgagtttgttacaacaacaacccttgatt 685  Q
    |||||||||||||||||||||||||||||    
T  29815377 tgagtttgttacaacaacaacccttgatt 29815405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 628
Target Start/End: Original strand, 35732285 - 35732352
Alignment:
Q  561 taaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggta 628  Q
    ||||| || ||||||||||||||||||||||||   |||||||||| |||| ||| |||| |||||||    
T  35732285 taaagtgaacaactcactttagagtgtaaagtgactaatatcgaccgttaaataacaaatcaaaggta 35732352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 547 - 686
Target Start/End: Complemental strand, 38603172 - 38603033
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataa 646  Q
    ||||||||| ||| ||||  ||||||||||||||||||||||||||| | |||||| ||| |||||||| |||| ||||||| ||||||| ||||||| |    
T  38603172 ggatccggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacatta 38603073  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgattt 686  Q
    |||||  |||||||||||||| || |||||||||||||||    
T  38603072 taacaaatcatgagtttgttaaaataacaacccttgattt 38603033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 547 - 686
Target Start/End: Original strand, 37757418 - 37757557
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataa 646  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||| | |||||| | | |||||||| |||| ||||||| ||||||| ||||||| |    
T  37757418 ggatccggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacatta 37757517  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgattt 686  Q
    |||||  |||||||||||||| || ||||||| |||||||    
T  37757518 taacaagtcatgagtttgttaaaataacaacctttgattt 37757557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 547 - 686
Target Start/End: Original strand, 37763166 - 37763305
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataa 646  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||| | |||||| | | |||||||| |||| ||||||| ||||||| ||||||| |    
T  37763166 ggatccggctcctctaaaatgagcaactcactttagagtgtaaagtgaataatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacatta 37763265  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgattt 686  Q
    |||||  |||||||||||||| || ||||||| |||||||    
T  37763266 taacaagtcatgagtttgttaaaataacaacctttgattt 37763305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 557 - 703
Target Start/End: Complemental strand, 30969907 - 30969761
Alignment:
Q  557 cctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttca 656  Q
    ||||||||| |||||||| ||||||||||||||||||   |||||| ||| |||||||| |||| || |||  || |||| |||| || ||||||  |||    
T  30969907 cctctaaagtgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatca 30969808  T
Q  657 tgagtttgttacaacaacaacccttgatttacgcactttatacttta 703  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||||    
T  30969807 tgagtttgttacaataacaacccttgattttctcactttacacttta 30969761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 706
Target Start/End: Complemental strand, 28984280 - 28984141
Alignment:
Q  568 agcaactcactttagagtgtaaagtggaaaatatcgaccattaatt-aataaatgaaaggtatatattgttggtacataataacagttcatgagtttgtt 666  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||| || ||||  || ||| |||||||  ||||| || ||||  ||| |||||||||    
T  28984280 agcaactcactttagagagtaaagtggacaatattaaccattaattaaaaaaattcaaagtagatattgtacgtacacaacaacaaatcacgagtttgtt 28984181  T
Q  667 acaacaacaacccttgatttacgcactttatactttactc 706  Q
    | || || |||||||||||| | |||||||| ||||||||    
T  28984180 ataataataacccttgattttctcactttattctttactc 28984141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 547 - 636
Target Start/End: Original strand, 25583989 - 25584078
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgt 636  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||   |||||| |||||||||||| | || ||| ||| |||||||    
T  25583989 ggatccggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatatcaaccattaattaaaagatcaaaagtagatattgt 25584078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 632 - 713
Target Start/End: Original strand, 19267355 - 19267436
Alignment:
Q  632 attgttggtacataataacagttcatgagtttgttacaacaacaacccttgatttacgcactttatactttactcattttag 713  Q
    ||||| ||||||| ||||||  |||||||||||||| || ||||||||||||||| | || |||| |||||||||| |||||    
T  19267355 attgtaggtacatcataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttag 19267436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 583
Target Start/End: Complemental strand, 28984325 - 28984289
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttaga 583  Q
    ||||||||| |||||||||||||||||||||||||||    
T  28984325 ggatccggctcctctaaagcgagcaactcactttaga 28984289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 571 - 713
Target Start/End: Complemental strand, 51672599 - 51672458
Alignment:
Q  571 aactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgttacaa 670  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||| ||| ||||||  | ||||| ||||||  ||||||||||| |||||    
T  51672599 aactcactttagagtgtaaagtggacaatatcaaccgttaattaacaaattaaa-gtagatattgcagatacatcataacaaatcatgagtttgatacaa 51672501  T
Q  671 caacaacccttgatttacgcactttatactttactcattttag 713  Q
     ||||||| ||||||| | ||| ||| |||| ||||| |||||    
T  51672500 taacaacctttgattttctcacgttacacttaactcactttag 51672458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 557 - 696
Target Start/End: Original strand, 18280400 - 18280539
Alignment:
Q  557 cctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttca 656  Q
    ||||||||| |||||||||||||||||||||||||||   |||||  ||| | ||| || |||| ||||||| |||||||  |||||| ||||||  |||    
T  18280400 cctctaaagtgagcaactcactttagagtgtaaagtgagtaatataaaccgtcaatgaacaaattaaaggtaaatattgtaagtacatcataacaaatca 18280499  T
Q  657 tgagtttgttacaacaacaacccttgatttacgcacttta 696  Q
    | | | |||||||| ||||||||||||||| | |||||||    
T  18280500 taaatatgttacaataacaacccttgattttctcacttta 18280539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 713
Target Start/End: Complemental strand, 8296342 - 8296178
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataa 646  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||   | ||   ||| | ||| || || | |||||||  ||||||  ||||||||    
T  8296342 ggatctggctcctctaaagtgagcaactcactttagagtgtaaagtgagtatta--aaccgtcaatgaacaatttaaaggtaagtattgtaagtacataa 8296245  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgatttacgcactttatactttactcattttag 713  Q
    |||||  |||||| |  ||||||| ||||||||||||||| | ||||||||| || ||||| |||||    
T  8296244 taacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttag 8296178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 547 - 634
Target Start/End: Complemental strand, 44971097 - 44971010
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatatt 634  Q
    ||||||||| ||||||||  |||||||  ||||||||||||||| ||||  ||||| ||| |||||||  |||||||||||| |||||    
T  44971097 ggatccggctcctctaaaatgagcaaccaactttagagtgtaaaatggaccatatcaaccgttaattagcaaatgaaaggtaaatatt 44971010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 588
Target Start/End: Complemental strand, 32408052 - 32408011
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgta 588  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||    
T  32408052 ggatcaggctcctctaaagtgagcaactcactttagagtgta 32408011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 594
Target Start/End: Original strand, 36554144 - 36554193
Alignment:
Q  545 acggatccggcacctctaaagcgagcaactcactttagagtgtaaagtgg 594  Q
    ||||||||||| ||||||||   |||||||||||||||||| ||||||||    
T  36554144 acggatccggctcctctaaaataagcaactcactttagagtataaagtgg 36554193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 636
Target Start/End: Original strand, 50332580 - 50332669
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgt 636  Q
    |||||| || |||||||||  || || |||||||||| ||||||||    ||||| ||||||||||||| |||| ||||||| |||||||    
T  50332580 ggatcctgctcctctaaagttagtaattcactttagaatgtaaagttagtaatattgaccattaattaacaaatcaaaggtagatattgt 50332669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 559 - 713
Target Start/End: Complemental strand, 29391312 - 29391161
Alignment:
Q  559 tctaaagcgagcaactcacttt-agagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcat 657  Q
    ||||||| |||||||||||||| |||||||||||| |  |||||| ||  |||||||| |||| ||||| ||||||||| ||||||| ||||    | ||    
T  29391312 tctaaagggagcaactcacttttagagtgtaaagtaggcaatatcaactgttaattaacaaattaaaggcatatattgtaggtacatcataa----ttat 29391217  T
Q  658 gagtttgttacaacaacaacccttgatttacgcactttatactttactcattttag 713  Q
    ||||||||||||| |||||||||  |||| |  |||||| |||||||||| |||||    
T  29391216 gagtttgttacaataacaaccctcaattttcttactttacactttactcactttag 29391161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 702
Target Start/End: Complemental strand, 31389254 - 31389124
Alignment:
Q  571 aactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgttacaa 670  Q
    ||||||||||||||||||||||| | ||||||  |  ||||||||||||| || |||| ||||||| |||||||  |||||  |||||||||| ||  ||    
T  31389254 aactcactttagagtgtaaagtgaataatatcagcagttaattaataaatcaa-ggtagatattgtaggtacatcctaacaaatcatgagtttatttaaa 31389156  T
Q  671 caacaacccttgatttacgcactttatacttt 702  Q
     ||||||||||||||| | ||||||| |||||    
T  31389155 taacaacccttgatttgctcactttacacttt 31389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 701
Target Start/End: Original strand, 23499340 - 23499493
Alignment:
Q  548 gatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataat 647  Q
    |||||||| |||| |||| ||| || ||||||||||| ||||||||   |||  | ||| |||||| | |||| ||||| | || |||| || |||| ||    
T  23499340 gatccggctcctccaaagtgagtaattcactttagagagtaaagtgagtaatggcaaccgttaatttacaaatcaaaggaaaattttgtaggaacatcat 23499439  T
Q  648 aacagttcatgagtttgttacaacaacaacccttgatttacgcactttatactt 701  Q
    ||||  |||||||||||||| || |||||||||| |||| | ||||||| ||||    
T  23499440 aacaaatcatgagtttgttaaaataacaacccttaattttctcactttacactt 23499493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 550 - 620
Target Start/End: Original strand, 9521817 - 9521887
Alignment:
Q  550 tccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaat 620  Q
    |||||| ||||||||| ||  || ||||||||||||||||||||   |||||| |||||||||||| ||||    
T  9521817 tccggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatcaaccattaattaacaaat 9521887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 727
Target Start/End: Complemental strand, 13866342 - 13866174
Alignment:
Q  561 taaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttca--tg 658  Q
    ||||| ||||||||||||||| |||||||| ||   |||||| ||| ||||||||||||| ||| ||| ||||||||||||||| ||||||    |  ||    
T  13866342 taaagtgagcaactcactttaaagtgtaaattgagcaatatcaaccgttaattaataaattaaaagtacatattgttggtacatgataacaacaaatctg 13866243  T
Q  659 agtttgttacaacaacaacccttgatttacgcactttatactttactcattttagtgaatcctttccct 727  Q
    ||||  ||| || ||||||||||||||| |  |||||| |||||| ||| ||||| |||||||| ||||    
T  13866242 agttgtttaaaataacaacccttgattttctgactttacactttattcactttagagaatccttgccct 13866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 701
Target Start/End: Complemental strand, 39421678 - 39421524
Alignment:
Q  547 ggatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataa 646  Q
    ||||| ||| ||||||||| ||||||  ||||||| ||| |||||||   |||||| |||||| ||||| |||| ||||||| |||||    |||||  |    
T  39421678 ggatctggctcctctaaagtgagcaatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaaggtagatattagaagtacacca 39421579  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgatttacgcactttatactt 701  Q
    |||||  |||||||||||||| || ||||||| ||||||| | ||||||| ||||    
T  39421578 taacaaatcatgagtttgttaaaataacaacctttgattttctcactttacactt 39421524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 12034362 - 12034285
Alignment:
Q  548 gatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaag 625  Q
    |||||||| ||||||||| ||  |||||  |||||||||||||||||| |||||| | ||||| ||||||||| ||||    
T  12034362 gatccggctcctctaaagtgatgaactcgttttagagtgtaaagtggacaatatcaatcattacttaataaattaaag 12034285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 696
Target Start/End: Complemental strand, 12056058 - 12055910
Alignment:
Q  548 gatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataat 647  Q
    |||||||  ||||||||| ||  ||||  ||||||| ||||||||||| |||||| | ||||| ||||||||  ||||||| ||||||| |||| || ||    
T  12056058 gatccggatcctctaaagtgatgaacttgctttagattgtaaagtggacaatatcaatcattacttaataaaataaaggtagatattgtaggtatatcat 12055959  T
Q  648 aacagttcatgagtttgttacaacaacaacccttgatttacgcacttta 696  Q
    |  |  |||  ||||||||| || || |||||||||||| | |||||||    
T  12055958 agaaaatcacaagtttgttataataaaaacccttgattttctcacttta 12055910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 651
Target Start/End: Complemental strand, 35229555 - 35229470
Alignment:
Q  567 gagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaat-aaatgaaaggtatatattgttggtacataataaca 651  Q
    |||||||||||||| |||||||||||    |||||| ||  ||||||||  |||| ||||||||||||||| ||||||| ||||||    
T  35229555 gagcaactcacttttgagtgtaaagttagcaatatcaactgttaattaaccaaattaaaggtatatattgtgggtacatcataaca 35229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 722
Target Start/End: Complemental strand, 14518762 - 14518610
Alignment:
Q  568 agcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgtta 667  Q
    |||||||||||||| | ||| ||||||| |||||| ||  |||||| | |||| |||||   ||||||| ||||||| ||||||  |||||||||| |||    
T  14518762 agcaactcactttaaactgtgaagtggacaatatcaactgttaatttaaaaattaaagg--gatattgtaggtacatcataacaaatcatgagtttctta 14518665  T
Q  668 caacaacaacccttgatttacgcactttatactttactcattttagtgaatcctt 722  Q
     || |||||  |||||||| | ||||||| |||||| ||| ||||| ||||||||    
T  14518664 taataacaattcttgattttctcactttacactttattcactttagagaatcctt 14518610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 707
Target Start/End: Original strand, 9611725 - 9611862
Alignment:
Q  569 gcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgttac 668  Q
    ||||||||||||||||  ||||  | | |||||| ||| |||||||  |||| |||| |||||||||| |||| || |||||   ||||||||||||||     
T  9611725 gcaactcactttagagcataaatcgaataatatcaaccgttaattagcaaatcaaag-tatatattgtaggtatatcataacgaatcatgagtttgttat 9611823  T
Q  669 aacaacaacccttgatttacgcactttatactttactca 707  Q
    |  |||||||| |||||| | | ||||| ||||||||||    
T  9611824 agtaacaacccgtgattttctcgctttacactttactca 9611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 686
Target Start/End: Complemental strand, 41417310 - 41417172
Alignment:
Q  548 gatccggcacctctaaagcgagcaactcactttagagtgtaaagtggaaaatatcgaccattaattaataaatgaaaggtatatat-tgttggtacataa 646  Q
    |||||||| ||||| ||| |||||||||||||||||||||| | || | |||||| ||| ||| ||||||||| ||||||| |||| |   ||| ||| |    
T  41417310 gatccggctcctctgaagtgagcaactcactttagagtgtaga-tgaacaatatcaaccgttatttaataaattaaaggtagatatattcaggtgcatca 41417212  T
Q  647 taacagttcatgagtttgttacaacaacaacccttgattt 686  Q
    || ||  ||| ||||||||||||| |||||||||||||||    
T  41417211 tagcaaatcacgagtttgttacaataacaacccttgattt 41417172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 26868974 - 26868934
Alignment:
Q  550 tccggcacctctaaagcgagcaactcactttagagtgtaaa 590  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  26868974 tccggctcctctaaagcgagcaactcactttagaatgtaaa 26868934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 686
Target Start/End: Original strand, 14106 - 14193
Alignment:
Q  599 tatcgaccattaattaataaatgaaaggtatatattgttggtacataataacagttcatgagtttgttacaacaacaacccttgattt 686  Q
    |||| ||||||||||||||||| ||| ||||||||| | ||||||| |||| |  ||||| |||||||| || ||||||| |||||||    
T  14106 tatcaaccattaattaataaatcaaaagtatatattttaggtacatcataataaatcatgcgtttgttaaaataacaaccattgattt 14193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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