View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-40-LTR4-TNT-insertion-4 (Length: 129)
Name: Tnk88-40-LTR4-TNT-insertion-4
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-40-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 2e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 152780 - 152670
Alignment:
| Q |
10 |
atcaacaagtgaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgttgtgtgatca |
109 |
Q |
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| T |
152780 |
atcaacaagtgaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgttgtgtgatca |
152681 |
T |
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| Q |
110 |
accttcaattg |
120 |
Q |
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| T |
152680 |
accttcaattg |
152670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 161257 - 161147
Alignment:
| Q |
10 |
atcaacaagtgaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgttgtgtgatca |
109 |
Q |
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| T |
161257 |
atcaacaagtgaaacataattgcatatataaggttgttcttgataatgacattgttctagggcaatgaggttccttaaaacacattctgttgtgtgatca |
161158 |
T |
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| Q |
110 |
accttcaattg |
120 |
Q |
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| T |
161157 |
accttcaattg |
161147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 106515 - 106597
Alignment:
| Q |
20 |
gaaacataattgcatatataaggttgttcttgatactgacattgttctagggcaatgaggttccttagaacgcattctgttgt |
102 |
Q |
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| T |
106515 |
gaaacataattgcatatgaaaggttggtttgaataatgacattgttccaaagcaatgaggttcctaagaacacattcagttgt |
106597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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