View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-40-LTR4-TNT-insertion-5 (Length: 257)
Name: Tnk88-40-LTR4-TNT-insertion-5
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-40-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 47126588 - 47126369
Alignment:
| Q |
30 |
tgtgtaccaatttactgaagaatgatagctccataaaaacgaaagaccttggatcaaacattactatacatgttagaattatagaggtatatgccaagca |
129 |
Q |
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| T |
47126588 |
tgtgtaccaatttactgaagaatgatagctccataaaaacgaaagaccttggatcaaacattactatacatgttagaattatagaggtatatgccaagca |
47126489 |
T |
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| Q |
130 |
tcccaacttcatgagggnnnnnnncttcaataacttaacataaatcaactcatatggagaacaattaacgctttatagtcattgttatgatcaacaaaga |
229 |
Q |
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| T |
47126488 |
tcccaactttatgagggtttttttcttcaataacttaacataaatcaactcatatgcagaacaattaacgctttatagtcattgttatgatcaacaaaga |
47126389 |
T |
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| Q |
230 |
gtaacacatgttttggaatt |
249 |
Q |
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| T |
47126388 |
gtaacacatgttttggaatt |
47126369 |
T |
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