View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Tnk88-40-LTR4-TNT-insertion-8 (Length: 287)
Name: Tnk88-40-LTR4-TNT-insertion-8
Description: Tnk88-40-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Tnk88-40-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 43076357 - 43076626
Alignment:
| Q |
7 |
aataaataattgtgattgaaacaatataaacttataatcttatactgaacttgaaatctaaacattcattcaggcgttacctggtttccgtataagagag |
106 |
Q |
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| T |
43076357 |
aataaataatt-tgattgaaacaatataaacttataatcttatactgaacttgaaatctaaacattcattcaggcgttacctggtttccgtataagagag |
43076455 |
T |
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| Q |
107 |
gcgacgaagacacgaatggttgaaaacgaagtattgagaagagaagaatggacacaattactgtcaccttcttcatcggttactctattttcgaccttat |
206 |
Q |
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| T |
43076456 |
gcgacgaagacacgaatggttgaaaacgaagtattgagaagagaagaatggacacaattactgtcaccttcttcatcggttactctattttcgaccttat |
43076555 |
T |
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| Q |
207 |
tcgcgtctaatctcaatttacacggtgaagtaattcgaccaagatacaggactttaccaagaagtttatta |
277 |
Q |
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| T |
43076556 |
tcgcgtctaatctcaatttacacggtgaagtaattcgaccaagatacaggactttaccaagaagtttatta |
43076626 |
T |
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